MetaCyc Pathway: superpathway of plastoquinol biosynthesis in Pseudomonas putida KT2440

Reactions and Genes	mixed (C)s Trisodium citrate 10 mM and 3-Chloro-L-tyrosine 10 mM
geranyl diphosphate + 7 3-methylbut-3-en-1-yl diphosphate→all-trans-nonaprenyl diphosphate + 7 diphosphate (EC 2.5.1.84)
No genes
Aspartate transaminase: L-tyrosine + 2-oxoglutarate→3-(4-hydroxyphenyl)pyruvate + L-glutamate (EC 2.6.1.1; 2.6.1.27; 2.6.1.5; 2.6.1.57)
PP_0486	-0.1
PP_0858	-0.2
PP_0967	-0.3
PP_1109	+0.0
PP_1872	-0.3
PP_1972	+0.0
PP_2642	-0.1
PP_2948	+0.2
PP_3544	-0.1
PP_3590	-3.1
PP_3750	+0.2
PP_3786	-0.2
PP_4197	-0.8
PP_5275	-0.1
PP_5342	-0.1
4-hydroxyphenylpyruvate dioxygenase: 3-(4-hydroxyphenyl)pyruvate + dioxygen→homogentisate + CO2 (EC 1.13.11.27)
PP_2554	+0.1
PP_3433	-1.6
all-trans-nonaprenyl diphosphate + homogentisate + H+→2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + CO2 + diphosphate (EC 2.5.1.117)
No genes
2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + S-adenosyl-L-methionine→plastoquinol-9 + S-adenosyl-L-homocysteine + H+ (EC 2.1.1.295)
No genes

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information