MetaCyc Pathway: pyrimidine deoxyribonucleotides de novo biosynthesis IV in Escherichia coli BW25113
| Reactions and Genes | LB + carbenicillin Time48hr |
|---|---|
| remove | |
| Nucleoside-triphosphatase: CTP + H2O→CDP + H+ + phosphate (EC 3.6.1.15; 3.6.1.5) | |
| b2954 (yggV) | -1.2 |
| Ribonucleoside-diphosphate reductase (in reverse): CDP + a reduced thioredoxin→dCDP + an oxidized thioredoxin + H2O (EC 1.17.4.1) | |
| b2234 (nrdA) | N.D. |
| b2235 (nrdB) | N.D. |
| b2674 (nrdI) | -0.1 |
| b2675 (nrdE) | -0.0 |
| b2676 (nrdF) | -0.1 |
| Nucleoside-diphosphate kinase: dCDP + ATP→dCTP + ADP (EC 2.7.4.6) | |
| b0474 (adk) | N.D. |
| b2518 (ndk) | +0.0 |
| dCTP deaminase (dUMP-forming): dCTP + 2 H2O→dUMP + ammonium + diphosphate (EC 3.5.4.30) | |
| No genes | |
| Thymidylate synthase: dUMP + 5,10-methylene-tetrahydromethanopterin→dTMP + 7,8-dihydromethanopterin (EC 2.1.1.45) | |
| b2827 (thyA) | N.D. |
| T(2)-induced deoxynucleotide kinase: dTMP + ATP→dTDP + ADP (EC 2.7.4.12; 2.7.4.13; 2.7.4.9) | |
| b1098 (tmk) | N.D. |
| Nucleoside-diphosphate kinase: dTDP + ATP→dTTP + ADP (EC 2.7.4.6) | |
| b0474 (adk) | N.D. |
| b2518 (ndk) | +0.0 |
Links:
- Pathway details at MetaCyc
- Fitness data for 10 genes
- All MetaCyc pathways for Escherichia coli BW25113
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information