MetaCyc Pathway: ammonia assimilation cycle III in Phocaeicola dorei CL03T12C01

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Reactions and Genes L-Serine (N); Varel_Bryant_medium_Glucose_lowCys_noNitrogen
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Glutamate synthase (NADPH):
L-glutamine + H2O→ammonia + L-glutamate + H+ (EC 1.4.1.13; 1.4.1.14; 1.4.7.1; 2.6.1.85; 3.5.1.2; 3.5.1.38; 4.1.3.27; 4.3.2.10; 4.3.3.6; 6.3.4.2; 6.3.5.13; 6.3.5.2; 6.3.5.4; 6.3.5.5; 6.3.5.6; 6.3.5.7)
ABI39_RS02050 N.D.
ABI39_RS02225 -0.6
ABI39_RS04255 -0.4
ABI39_RS06225 N.D.
ABI39_RS07655 -0.0
ABI39_RS07830 +0.2
ABI39_RS11235 -0.1
ABI39_RS14180 +0.1
ABI39_RS17470 N.D.
ABI39_RS17985 -6.1
ABI39_RS17990 -0.7
ABI39_RS18865 +0.0
ABI39_RS20135 -0.4
ABI39_RS20665 -5.4
ABI39_RS20670 -6.7
ABI39_RS20685 -2.2
ABI39_RS20690 -2.0
ABI39_RS20695 -1.4
ABI39_RS21050 -7.8
ABI39_RS21055 -5.3
ABI39_RS21945 -0.2
Glutamate synthase (NADPH) (in reverse):
ammonia + 2-oxoglutarate + NADPH + 2 H+→L-glutamate + NADP+ + H2O (EC 1.4.1.13; 1.4.1.14)
ABI39_RS02050 N.D.
ABI39_RS06225 N.D.
ABI39_RS07655 -0.0
ABI39_RS07830 +0.2
ABI39_RS14180 +0.1
ABI39_RS18865 +0.0
ABI39_RS20685 -2.2
ABI39_RS20690 -2.0
Glutamate--ammonia ligase:
L-glutamate + ammonium + ATP→L-glutamine + ADP + H+ + phosphate (EC 6.3.1.2)
ABI39_RS14270 -5.2
ABI39_RS17695 -0.2
ABI39_RS17945 -2.3

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information