MetaCyc Pathway: limonene degradation IV (anaerobic) in Agrobacterium fabrum C58

Reactions and Genes	L-Pipecolic Acid (N)
limonene + an oxidized electron carrier + H2O→perillyl alcohol + a reduced two electron carrier (EC 1.17.99.8)
No genes
Perillyl-alcohol dehydrogenase: perillyl alcohol + NAD+→perillyl aldehyde + NADH + H+ (EC 1.1.1.144)
No genes
Aldehyde dehydrogenase (NAD(+)): perillyl aldehyde + NAD+ + H2O→perillate + NADH + 2 H+ (EC 1.2.1.3)
Atu2139	-0.1
Atu2224	-0.0
Atu3401	-0.1
Atu3403	+0.2
Atu3950	-0.1
Atu3959	-0.1
Atu4153	-2.6
Atu4241	+0.1
Atu4849	-0.3
Atu5228	N.D.
perillate + ATP + coenzyme A→perillyl-CoA + AMP + diphosphate (EC 6.2.1.M31)
No genes
perillyl-CoA + H2O→2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA
No genes
2-hydroxy-4-isopropenylcyclohexane-1-carboxyl-CoA + NAD+→2-oxo-4-Isopropenylcyclohexane-1-carboxyl-CoA + NADH + H+
No genes
2-oxo-4-Isopropenylcyclohexane-1-carboxyl-CoA + H2O→4-(isopropenyl)pimeloyl-CoA + H+
No genes

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information