MetaCyc Pathway: aerobic respiration I (cytochrome c) in Pseudomonas sp. RS175

Reactions and Genes	caffeic (C) 2.5 mM
NADH[in] + 5 H+[in] + a ubiquinone→a ubiquinol + NAD+[in] + 4 H+[out] (EC 7.1.1.2)
PFR28_02133	-0.1
PFR28_02627	N.D.
PFR28_02628	N.D.
PFR28_02629	N.D.
PFR28_02630	N.D.
PFR28_02631	N.D.
PFR28_02632	N.D.
PFR28_02633	N.D.
PFR28_02634	N.D.
PFR28_02635	N.D.
PFR28_02636	N.D.
PFR28_02637	N.D.
PFR28_02638	N.D.
PFR28_02639	N.D.
PFR28_03740	+0.1
Succinate dehydrogenase (ubiquinone): succinate[in] + a ubiquinone→a ubiquinol + fumarate[in] (EC 1.3.5.1)
PFR28_03098	N.D.
a ubiquinol + 2 an oxidized c-type cytochrome[out] + 2 H+[in]→2 a reduced c-type cytochrome[out] + 4 H+[out] + a ubiquinone (EC 7.1.1.8)
No genes
4 a reduced c-type cytochrome[out] + dioxygen[in] + 8 H+[in]→2 H2O[in] + 4 an oxidized c-type cytochrome[out] + 4 H+[out] (EC 7.1.1.9)
PFR28_01088	-0.1
PFR28_01089	N.D.
PFR28_01090	-0.4
PFR28_01091	+0.1
PFR28_01092	-1.1
PFR28_01093	N.D.
PFR28_01094	-0.8
PFR28_01095	-0.1
PFR28_04688	-1.4
PFR28_04690	-1.3
PFR28_04691	-1.7

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information