MetaCyc Pathway: superpathway of plastoquinol biosynthesis in Pseudomonas sp. RS175

Reactions and Genes	Ferulic Acid (C) 2.5 mM
	remove
geranyl diphosphate + 7 3-methylbut-3-en-1-yl diphosphate→all-trans-nonaprenyl diphosphate + 7 diphosphate (EC 2.5.1.84)
No genes
Aspartate transaminase: L-tyrosine + 2-oxoglutarate→3-(4-hydroxyphenyl)pyruvate + L-glutamate (EC 2.6.1.1; 2.6.1.27; 2.6.1.5; 2.6.1.57)
PFR28_00188	-4.2
PFR28_00302	-0.0
PFR28_00800	-1.4
PFR28_00908	+0.1
PFR28_00984	-0.2
PFR28_01312	-0.7
PFR28_01605	+0.1
PFR28_01790	-0.1
PFR28_02468	+0.1
PFR28_02838	-0.1
PFR28_02973	-0.5
PFR28_03061	-0.1
PFR28_03135	+0.2
PFR28_04404	+0.1
PFR28_04508	-0.2
4-hydroxyphenylpyruvate dioxygenase: 3-(4-hydroxyphenyl)pyruvate + dioxygen→homogentisate + CO₂ (EC 1.13.11.27)
PFR28_02475	-0.2
PFR28_03813	+0.2
all-trans-nonaprenyl diphosphate + homogentisate + H⁺→2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + CO₂ + diphosphate (EC 2.5.1.117)
No genes
2-methyl-6-all-trans-nonaprenyl-1,4-benzoquinol + S-adenosyl-L-methionine→plastoquinol-9 + S-adenosyl-L-homocysteine + H⁺ (EC 2.1.1.295)
No genes

Links:

Pathway details at MetaCyc
Fitness data for 17 genes
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All MetaCyc pathways for Pseudomonas sp. RS175

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information