MetaCyc Pathway: ammonia assimilation cycle III in Agrobacterium fabrum C58

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Reactions and Genes L-Leucine (N)
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Glutamate synthase (NADPH):
L-glutamine + H2O→ammonia + L-glutamate + H+ (EC 1.4.1.13; 1.4.1.14; 1.4.7.1; 2.6.1.85; 3.5.1.2; 3.5.1.38; 4.1.3.27; 4.3.2.10; 4.3.3.6; 6.3.4.2; 6.3.5.13; 6.3.5.2; 6.3.5.4; 6.3.5.5; 6.3.5.6; 6.3.5.7)
Atu0145 -0.0
Atu0281 N.D.
Atu0930 +0.0
Atu1154 -0.1
Atu1318 N.D.
Atu1319 N.D.
Atu1324 N.D.
Atu1618 N.D.
Atu1676 +0.0
Atu1859 -0.1
Atu2170 N.D.
Atu2178 N.D.
Atu2289 -3.3
Atu2658 -0.0
Atu3243 -0.0
Atu3369 +0.1
Atu3640 +0.1
Atu3783 +1.0
Atu3784 +1.1
Atu4228 -0.1
Atu4229 +0.1
Atu4441 +0.0
Atu4443 +0.1
Atu5476 +0.1
Glutamate synthase (NADPH) (in reverse):
ammonia + 2-oxoglutarate + NADPH + 2 H+→L-glutamate + NADP+ + H2O (EC 1.4.1.13; 1.4.1.14)
Atu0145 -0.0
Atu0930 +0.0
Atu1154 -0.1
Atu3640 +0.1
Atu3783 +1.0
Atu3784 +1.1
Atu4228 -0.1
Atu4229 +0.1
Atu4443 +0.1
Glutamate--ammonia ligase:
L-glutamate + ammonium + ATP→L-glutamine + ADP + H+ + phosphate (EC 6.3.1.2)
Atu0193 -0.4
Atu0602 -0.0
Atu1770 -1.3
Atu2142 -0.2
Atu2416 -0.2
Atu4230 +0.2

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information