MetaCyc Pathway: partial TCA cycle (obligate autotrophs) in Pseudomonas simiae WCS417

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Reactions and Genes octanoate (C)
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Phosphoenolpyruvate carboxylase (in reverse):
phosphoenolpyruvate + hydrogen carbonate→oxaloacetate + phosphate (EC 4.1.1.31)
PS417_06060 -2.3
Citrate (Si)-synthase:
oxaloacetate + acetyl-CoA + H2O→citrate + coenzyme A + H+ (EC 2.3.3.1; 2.3.3.16; 2.3.3.3)
PS417_08870 N.D.
oxaloacetate[in] + an electron-transfer quinol→(S)-malate[in] + an electron-transfer quinone (EC 1.1.5.4)
PS417_07955 -0.0
PS417_04460 N.D.
Aconitate hydratase:
citrate→cis-aconitate + H2O (EC 4.2.1.3)
PS417_07515 +0.1
PS417_14990 N.D.
PS417_21070 -0.1
Fumarate hydratase:
(S)-malate→fumarate + H2O (EC 4.2.1.2)
PS417_11625 -0.1
PS417_19200 -0.1
PS417_22635 N.D.
PS417_04305 +0.3
Aconitate hydratase:
cis-aconitate + H2O→D-threo-isocitrate (EC 4.2.1.3)
PS417_07515 +0.1
PS417_14990 N.D.
PS417_21070 -0.1
Succinate dehydrogenase (ubiquinone) (in reverse):
fumarate[in] + an electron-transfer quinol→succinate[in] + an electron-transfer quinone (EC 1.3.5.1)
PS417_08875 N.D.
PS417_08880 N.D.
PS417_08885 N.D.
PS417_08890 N.D.
Isocitrate dehydrogenase (NADP(+)):
D-threo-isocitrate + NADP+→2-oxoglutarate + CO2 + NADPH (EC 1.1.1.42)
PS417_16525 -1.0
PS417_16530 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information