MetaCyc Pathway: 2-deoxy-D-ribose degradation II in Pseudomonas simiae WCS417

Reactions and Genes	Fraxetin 3 mM; solid stress
2-deoxy-β-D-ribopyranose + 2 an oxidized c-type cytochrome→2-deoxy-ribono-1,5-lactone + 2 a reduced c-type cytochrome + 2 H+ (EC 1.1.2.M2)
PS417_10885	+0.1
PS417_10890	-0.0
2-deoxy-ribono-1,5-lactone + H2O→2-deoxy-D-ribonate + H+
PS417_07255	-0.4
2-deoxy-D-ribonate + NAD+→2-deoxy-3-dehydro-D-ribonate + NADH + H+ (EC 1.1.1.M55)
PS417_07245	-0.2
2-deoxy-3-dehydro-D-ribonate + acetyl-CoA→acetoacetate + D-glyceroyl-CoA
PS417_07250	-0.0
Acetoacetate--CoA ligase: acetoacetate + ATP + coenzyme A→acetoacetyl-CoA + AMP + diphosphate (EC 6.2.1.16)
PS417_12145	-0.3
PS417_15170	+0.0
PS417_17010	-0.0
PS417_19290	-0.1
PS417_22065	-1.1
PS417_22070	-0.1
D-glyceroyl-CoA + H2O→D-glycerate + coenzyme A + H+
No genes
Acetyl-CoA C-acyltransferase (in reverse): acetoacetyl-CoA + coenzyme A→2 acetyl-CoA (EC 2.3.1.16; 2.3.1.9)
PS417_06710	+0.2
PS417_07580	N.D.
PS417_10515	-0.2
PS417_13855	-0.1
PS417_15175	N.D.
PS417_19210	-0.1
PS417_21220	+0.1
PS417_03145	-0.2
D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)
PS417_13970	+1.2

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information