MetaCyc Pathway: adenosine nucleotides degradation II in Escherichia coli BW25113
| Reactions and Genes | 3hr_MSC_rep2_lowinoculum |
|---|---|
| remove | |
| 5'-nucleotidase: AMP + H2O→adenosine + phosphate (EC 3.1.3.5) | |
| b0383 (phoA) | -0.0 |
| b0480 (ushA) | +0.3 |
| b2291 (yfbR) | +0.1 |
| b2744 (surE) | -0.1 |
| b4055 (aphA) | -0.1 |
| b4374 (yjjG) | +0.1 |
| Adenosine deaminase: adenosine + H+ + H2O→inosine + ammonium (EC 3.5.4.4) | |
| b1623 (add) | +0.1 |
| b2593 (yfiH) | -1.4 |
| Purine-nucleoside phosphorylase: inosine + phosphate→hypoxanthine + α-D-ribose-1-phosphate (EC 2.4.2.1) | |
| b0391 (yaiE) | -0.2 |
| b2407 (xapA) | -0.1 |
| b2593 (yfiH) | -1.4 |
| b4384 (deoD) | +0.3 |
| Xanthine dehydrogenase: hypoxanthine + NAD+ + H2O→xanthine + NADH + H+ (EC 1.17.1.4) | |
| b0284 (yagR) | +0.2 |
| b0285 (yagS) | -0.1 |
| b2866 (xdhA) | +0.1 |
| b2867 (xdhB) | -0.3 |
| b2868 (xdhC) | -0.1 |
| Xanthine dehydrogenase: xanthine + NAD+ + H2O→urate + NADH + H+ (EC 1.17.1.4) | |
| b0284 (yagR) | +0.2 |
| b0285 (yagS) | -0.1 |
| b2866 (xdhA) | +0.1 |
| b2867 (xdhB) | -0.3 |
| b2868 (xdhC) | -0.1 |
Links:
- Pathway details at MetaCyc
- Fitness data for 16 genes
- All MetaCyc pathways for Escherichia coli BW25113
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information