| Reactions and Genes | Ying_all64 rep C; time point 3 |
|---|
| remove |
| syringate + a tetrahydrofolate→3-O-methylgallate + a 5-methyltetrahydrofolate |
| No genes |
| 3-O-methylgallate + dioxygen→2-pyrone-4,6-dicarboxylate + methanol + H+ |
| GFF1652 | -0.1 |
| GFF3801 | -1.7 |
| GFF3802 | -0.8 |
| 3-O-methylgallate + dioxygen→4-carboxy-2-hydroxy-6-methoxy-6-oxohexa-2,4-dienoate + H+ |
| No genes |
| 3-O-methylgallate + a tetrahydrofolate→gallate + a 5-methyltetrahydrofolate (EC 2.1.1.341) |
| No genes |
| gallate + dioxygen→(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate + 2 H+ (EC 1.13.11.57) |
| GFF1652 | -0.1 |
| GFF3312 | +0.5 |
| GFF3801 | -1.7 |
| GFF3802 | -0.8 |
| 4-carboxy-2-hydroxy-6-methoxy-6-oxohexa-2,4-dienoate + H2O→(1Z,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate + methanol + H+ |
| No genes |
2-pyrone-4,6-dicarboxylate lactonase:
2-pyrone-4,6-dicarboxylate + H2O→(1E)-4-oxobut-1-ene-1,2,4-tricarboxylate + H+ (EC 3.1.1.57) |
| GFF3800 | +0.4 |
| (1Z,3Z)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate→(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate (spontaneous) |
| No genes |
| (1E)-4-oxobut-1-ene-1,2,4-tricarboxylate→(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate (spontaneous) (EC 5.3.2.8) |
| No genes |
4-oxalmesaconate hydratase (in reverse):
(1E,3E)-4-hydroxybuta-1,3-diene-1,2,4-tricarboxylate + H2O→2-hydroxy-4-oxobutane-1,2,4-tricarboxylate (EC 4.2.1.83) |
| GFF3798 | -0.9 |
4-hydroxy-4-methyl-2-oxoglutarate aldolase:
2-hydroxy-4-oxobutane-1,2,4-tricarboxylate→oxaloacetate + pyruvate (EC 4.1.3.17) |
| GFF2963 | +0.1 |
| GFF3799 | -0.9 |
| GFF5061 | N.D. |
Malate dehydrogenase (oxaloacetate-decarboxylating):
oxaloacetate + H+→pyruvate + CO2 (EC 1.1.1.38; 1.1.1.40; 1.1.1.83; 4.1.1.112) |
| GFF2469 | +1.7 |
| GFF2675 | -0.9 |
| GFF3306 | -0.3 |
| GFF3799 | -0.9 |
| GFF3852 | -0.8 |
| GFF5061 | N.D. |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information