Reactions and Genes | Ying_all64 rep C; time point 3 |
| remove |
Aspartate kinase: L-aspartate + ATP→L-aspartyl-4-phosphate + ADP (EC 2.7.2.4) |
GFF5136 | N.D. |
Aspartate-semialdehyde dehydrogenase (in reverse): L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate (EC 1.2.1.11) |
GFF3359 | N.D. |
L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7) |
GFF1555 | +0.4 |
GFF1639 | +0.2 |
GFF1644 | +0.9 |
GFF2254 | +0.3 |
GFF5565 | N.D. |
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8) |
GFF2617 | N.D. |
Tetrahydrodipicolinate N-acetyltransferase: (S)-2,3,4,5-tetrahydrodipicolinate + acetyl-CoA + H2O→L-2-acetamido-6-oxoheptanedioate + coenzyme A (EC 2.3.1.89) |
No genes |
L-2-acetamido-6-oxoheptanedioate + L-glutamate→N-acetyl-L,L-2,6-diaminopimelate + 2-oxoglutarate |
No genes |
N-acetyldiaminopimelate deacetylase: N-acetyl-L,L-2,6-diaminopimelate + H2O→L,L-diaminopimelate + acetate (EC 3.5.1.47) |
GFF10 | +0.4 |
GFF529 | +0.5 |
Diaminopimelate epimerase: L,L-diaminopimelate→meso-diaminopimelate (EC 5.1.1.7) |
GFF545 | N.D. |
GFF5493 | +1.5 |
Diaminopimelate decarboxylase: meso-diaminopimelate + H+→L-lysine + CO2 (EC 4.1.1.20) |
GFF1341 | -3.5 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information