MetaCyc Pathway: formate to dimethyl sulfoxide electron transfer in Escherichia coli BW25113
| Reactions and Genes | 1-ethyl-3-methylimidazolium chloride 80 mM |
|---|---|
| remove | |
| formate[out] + a menaquinone + 2 H+[in]→a menaquinol + CO2[out] + H+[out] (EC 1.17.5.3) | |
| b1474 (fdnG) | +0.3 |
| b1475 (fdnH) | -0.3 |
| b1476 (fdnI) | -0.9 |
| b3892 (fdoI) | +1.1 |
| b3893 (fdoH) | +1.0 |
| b3894 (fdoG) | +1.2 |
| a menaquinol + dimethyl sulfoxide[out]→dimethyl sulfide[out] + a menaquinone + H2O[out] (EC 1.8.5.3) | |
| b0895 (dmsB) | -0.1 |
| b0896 (dmsC) | -0.0 |
| b1588 (ynfF) | -0.5 |
| b1590 (ynfH) | +0.3 |
| b3551 (bisC) | +0.1 |
Links:
- Pathway details at MetaCyc
- Fitness data for 11 genes
- All MetaCyc pathways for Escherichia coli BW25113
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information