MetaCyc Pathway: superpathway of the 3-hydroxypropanoate cycle in Agrobacterium fabrum C58

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Reactions and Genes D-Galacturonic Acid (C)
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Carbonate dehydratase (in reverse):
CO2 + H2O→hydrogen carbonate + H+ (EC 4.2.1.1)
Atu2488 N.D.
Biotin carboxylase:
hydrogen carbonate + ATP + a [biotin carboxyl-carrier-protein dimer]-N6-biotinyl-L-lysine→a [carboxyl-carrier protein dimer]-N6-carboxybiotinyl-L-lysine + ADP + H+ + phosphate (EC 6.3.4.14)
Atu1284 N.D.
Atu1330 N.D.
Atu1331 N.D.
Atu3913 -1.7
Atu4272 +0.1
Atu4273 -0.1
a [carboxyl-carrier protein dimer]-N6-carboxybiotinyl-L-lysine + acetyl-CoA→malonyl-CoA + a [biotin carboxyl-carrier-protein dimer]-N6-biotinyl-L-lysine (EC 2.1.3.15)
Atu0020 N.D.
Atu3630 N.D.
malonyl-CoA + NADPH + H+→3-oxopropanoate + coenzyme A + NADP+ (EC 1.2.1.75)
No genes
3-oxopropanoate + NADPH + H+→3-hydroxypropanoate + NADP+ (EC 1.1.1.298)
Atu2496 +0.1
Atu4280 +0.1
3-hydroxypropanoate + ATP + coenzyme A→3-hydroxypropanoyl-CoA + AMP + diphosphate (EC 6.2.1.36)
No genes
3-hydroxypropanoyl-CoA→acryloyl-CoA + H2O (EC 4.2.1.116)
Atu0322 -3.0
acryloyl-CoA + NADPH + H+→propanoyl-CoA + NADP+ (EC 1.3.1.84)
No genes
Propionyl-CoA carboxylase:
hydrogen carbonate + propanoyl-CoA + ATP→(S)-methylmalonyl-CoA + ADP + H+ + phosphate (EC 6.4.1.3)
Atu0020 N.D.
Atu3581 +0.2
Atu3586 +0.3
Atu3630 N.D.
Malyl-CoA lyase (in reverse):
propanoyl-CoA + glyoxylate→(2R,3S)-β-methylmalyl-CoA (EC 4.1.3.24)
No genes
Methylmalonyl-CoA epimerase (in reverse):
(S)-methylmalonyl-CoA→(R)-methylmalonyl-CoA (EC 5.1.99.1)
Atu3579 +0.4
(2R,3S)-β-methylmalyl-CoA→2-methylfumaryl-CoA + H2O (EC 4.2.1.148)
No genes
Methylmalonyl-CoA mutase:
(R)-methylmalonyl-CoA→succinyl-CoA (EC 5.4.99.2)
Atu3580 +0.1
2-methylfumaryl-CoA→3-methylfumaryl-CoA (EC 5.4.1.3)
No genes
succinyl-CoA + (S)-malate→(S)-malyl-CoA + succinate (EC 2.8.3.22)
No genes
3-methylfumaryl-CoA + H2O→(3S)-citramalyl-CoA (EC 4.2.1.153)
No genes
Citramalyl-CoA lyase:
(3S)-citramalyl-CoA→acetyl-CoA + pyruvate (EC 4.1.3.25)
No genes
Malyl-CoA lyase:
(S)-malyl-CoA→acetyl-CoA + glyoxylate (EC 4.1.3.24)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information