MetaCyc Pathway: Rubisco shunt in Variovorax sp. OAS795

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Reactions and Genes butyrate (C)
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Transketolase (in reverse):
β-D-fructofuranose 6-phosphate + D-glyceraldehyde 3-phosphate→D-erythrose 4-phosphate + D-xylulose 5-phosphate (EC 2.2.1.1)
ABID97_RS02445 N.D.
ABID97_RS11185 +0.4
ABID97_RS11190 +0.4
ABID97_RS12885 +0.0
Transaldolase (in reverse):
D-erythrose 4-phosphate + β-D-fructofuranose 6-phosphate→D-glyceraldehyde 3-phosphate + D-sedoheptulose 7-phosphate (EC 2.2.1.2)
ABID97_RS07095 +0.4
ABID97_RS07140 -0.6
Transketolase:
D-sedoheptulose 7-phosphate + D-glyceraldehyde 3-phosphate→D-xylulose 5-phosphate + D-ribose 5-phosphate (EC 2.2.1.1)
ABID97_RS02445 N.D.
ABID97_RS11185 +0.4
ABID97_RS11190 +0.4
ABID97_RS12885 +0.0
Ribose-5-phosphate isomerase:
D-ribose 5-phosphate→D-ribulose 5-phosphate (EC 5.3.1.6)
ABID97_RS14070 N.D.
Ribulose-phosphate 3-epimerase (in reverse):
D-xylulose 5-phosphate→D-ribulose 5-phosphate (EC 5.1.3.1)
ABID97_RS04905 N.D.
ABID97_RS12865 +0.5
Phosphoribulokinase:
D-ribulose 5-phosphate + ATP→D-ribulose-1,5-bisphosphate + ADP + H+ (EC 2.7.1.19)
ABID97_RS12880 +0.1
Ribulose-bisphosphate carboxylase (in reverse):
D-ribulose-1,5-bisphosphate + CO2 + H2O→2 3-phospho-D-glycerate + 2 H+ (EC 4.1.1.39)
ABID97_RS11770 +1.1
ABID97_RS12845 -0.2
ABID97_RS12850 +0.5
3-phospho-D-glycerate→2-phospho-D-glycerate (EC 5.4.2.12)
ABID97_RS06495 +2.6
ABID97_RS07385 N.D.
ABID97_RS23825 N.D.
Phosphopyruvate hydratase:
2-phospho-D-glycerate→phosphoenolpyruvate + H2O (EC 4.2.1.11)
ABID97_RS20195 N.D.
ABID97_RS28005 -2.2
ABID97_RS28010 N.D.
Pyruvate kinase (in reverse):
phosphoenolpyruvate + ADP + H+→pyruvate + ATP (EC 2.7.1.40)
ABID97_RS01755 -0.8
ABID97_RS24455 -0.4
ABID97_RS27675 +0.0

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information