MetaCyc Pathway: D-xylose degradation IV in Agrobacterium fabrum C58

Reactions and Genes	L-ascorbate (C)
D-xylopyranose + NAD(P)+→D-xylono-1,5-lactone + NAD(P)H + H+ (EC 1.1.1.359)
No genes
D-xylono-1,5-lactone + H2O→D-xylonate + H+ (EC 3.1.1.110)
No genes
Xylonate dehydratase: D-xylonate→2-dehydro-3-deoxy-D-pentonate + H2O (EC 4.2.1.82)
Atu2736	-0.4
Atu3219	-0.7
2-dehydro-3-deoxy-D-pentonate aldolase: 2-dehydro-3-deoxy-D-pentonate→glycolaldehyde + pyruvate (EC 4.1.2.28)
No genes
glycolaldehyde + an oxidized electron carrier→glycolate + a reduced two electron carrier + H+
No genes
Glyoxylate reductase: glycolate + NAD+→glyoxylate + NADH + H+ (EC 1.1.1.26)
Atu0077	-1.1
Atu5333	N.D.
Malate synthase: glyoxylate + acetyl-CoA + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9)
Atu0047	-2.9

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information