MetaCyc Pathway: L-arginine degradation III (arginine decarboxylase/agmatinase pathway) in Pseudomonas simiae WCS417

Add experiment(s):


Reactions and Genes Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
remove
Arginine decarboxylase:
L-arginine + H+→agmatine + CO2 (EC 4.1.1.19)
PS417_12240 -0.2
PS417_03005 -1.5
PS417_04005 +0.2
Agmatinase:
agmatine + H2O→putrescine + urea (EC 3.5.3.11)
PS417_20180 +0.1

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information