MetaCyc Pathway: putrescine biosynthesis II in Pseudomonas simiae WCS417

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Reactions and Genes Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=20h_outgrowth_LB; Time=7_days
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Arginine decarboxylase:
L-arginine + H+→agmatine + CO2 (EC 4.1.1.19)
PS417_12240 -0.2
PS417_03005 -1.5
PS417_04005 +0.2
Agmatine deiminase:
agmatine + H2O→N-carbamoylputrescine + ammonium (EC 3.5.3.12)
PS417_01340 -1.1
N-carbamoylputrescine amidase:
N-carbamoylputrescine + 2 H+ + H2O→putrescine + ammonium + CO2 (EC 3.5.1.53)
PS417_14835 -0.2
PS417_21815 +0.1

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information