MetaCyc Pathway: 3-methyl-branched fatty acid α-oxidation in Pseudomonas putida KT2440

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Reactions and Genes 1,6-Hexanediamine (N)
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Long-chain-fatty-acid--CoA ligase:
a 3-methyl-branched 2,3,4-saturated fatty acid + ATP + coenzyme A→a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA + AMP + diphosphate
(EC 6.2.1.3)
PP_3458 +0.0
PP_4549 +0.0
PP_4550 -0.0
a 3-methyl-branched 2,3,4-saturated fatty acyl-CoA + 2-oxoglutarate + dioxygen→a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA + CO2 + succinate
No genes
a 2-hydroxy-3-methyl-branched 2,3,4-saturated fatty acyl-CoA→a 2-methyl branched 2,3,4-saturated fatty aldehyde + formyl-CoA (EC 4.1.2.63)
No genes
Formyl-CoA hydrolase:
formyl-CoA + H2O→formate + coenzyme A + H+
(EC 3.1.2.10)
No genes
Aldehyde dehydrogenase (NAD(+)):
a 2-methyl branched 2,3,4-saturated fatty aldehyde + NAD+ + H2O→a 2-methyl branched 2,3,4-saturated fatty acid + NADH + 2 H+
(EC 1.2.1.3)
PP_0545 -0.1
PP_0665 -0.1
PP_0708 +0.1
PP_1948 +0.1
PP_2487 +0.1
PP_2589 -0.0
PP_2680 +0.1
PP_2694 +0.1
PP_3270 +0.1
PP_3463 +0.0
PP_3646 -0.1
PP_5258 +0.0
PP_5278 -2.0
PP_5372 -0.1
Long-chain-fatty-acid--CoA ligase:
a 2-methyl branched 2,3,4-saturated fatty acid + ATP + coenzyme A→a 2-methyl branched 2,3,4-saturated fatty acyl-CoA + AMP + diphosphate
(EC 6.2.1.3)
PP_3458 +0.0
PP_4549 +0.0
PP_4550 -0.0

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information