MetaCyc Pathway: pyrimidine deoxyribonucleotides de novo biosynthesis I in Agrobacterium fabrum C58

Reactions and Genes	Plant=Ntabacum; PlantTreatment=None; Sample=leaf; GrowthSubstrate=agar; Collection=Direct; Cocuture=C58C1OD2.0
Nucleoside-triphosphatase: CTP + H2O→CDP + H+ + phosphate (EC 3.6.1.15; 3.6.1.5)
Atu0326	N.D.
Ribonucleoside-diphosphate reductase (in reverse): UDP + a reduced thioredoxin→dUDP + an oxidized thioredoxin + H2O (EC 1.17.4.1)
Atu0069	N.D.
Atu0070	-1.5
Atu0071	-1.6
Atu1733	N.D.
Ribonucleoside-diphosphate reductase (in reverse): CDP + a reduced thioredoxin→dCDP + an oxidized thioredoxin + H2O (EC 1.17.4.1)
Atu0069	N.D.
Atu0070	-1.5
Atu0071	-1.6
Atu1733	N.D.
Nucleoside-diphosphate kinase: dUDP + ATP→dUTP + ADP (EC 2.7.4.6)
Atu1122	N.D.
Nucleoside-diphosphate kinase: dCDP + ATP→dCTP + ADP (EC 2.7.4.6)
Atu1122	N.D.
dUTP diphosphatase: dUTP + H2O→dUMP + diphosphate + H+ (EC 3.6.1.23; 3.6.1.9)
Atu0314	N.D.
Thymidylate synthase: dUMP + a 5,10-methylenetetrahydrofolate→dTMP + a 7,8-dihydrofolate (EC 2.1.1.45)
Atu2047	N.D.
T(2)-induced deoxynucleotide kinase: dTMP + ATP→dTDP + ADP (EC 2.7.4.12; 2.7.4.13; 2.7.4.9)
Atu0204	-0.0
Atu1498	N.D.
Nucleoside-diphosphate kinase: dTDP + ATP→dTTP + ADP (EC 2.7.4.6)
Atu1122	N.D.

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information