MetaCyc Pathway: superpathway of polyamine biosynthesis II in Pseudomonas simiae WCS417

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Reactions and Genes R2A with Polymyxin B sulfate 0.003 mg/ml
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Arginine decarboxylase:
L-arginine + H+→agmatine + CO2 (EC 4.1.1.19)
PS417_12240 +0.3
PS417_03005 -1.9
PS417_04005 -0.7
Arginase:
L-arginine + H2O→L-ornithine + urea (EC 3.5.3.1)
PS417_05475 +1.7
Adenosylmethionine decarboxylase:
S-adenosyl-L-methionine + H+→S-adenosyl 3-(methylsulfanyl)propylamine + CO2 (EC 4.1.1.50)
No genes
Agmatine deiminase:
agmatine + H2O→N-carbamoylputrescine + ammonium (EC 3.5.3.12)
PS417_01340 -0.8
Ornithine decarboxylase:
L-ornithine + H+→putrescine + CO2 (EC 4.1.1.17)
PS417_04005 -0.7
N-carbamoylputrescine amidase:
N-carbamoylputrescine + 2 H+ + H2O→putrescine + ammonium + CO2 (EC 3.5.1.53)
PS417_14835 -0.4
PS417_21815 +0.3
Spermidine synthase:
putrescine + S-adenosyl 3-(methylsulfanyl)propylamine→spermidine + S-methyl-5'-thioadenosine + H+ (EC 2.5.1.16)
PS417_08530 -0.1
Spermine synthase:
S-adenosyl 3-(methylsulfanyl)propylamine + spermidine→S-methyl-5'-thioadenosine + spermine + H+ (EC 2.5.1.22)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information