MetaCyc Pathway: superpathway of anaerobic energy metabolism (invertebrates) in Paraburkholderia sabiae LMG 24235

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Reactions and Genes Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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Phosphoenolpyruvate carboxykinase (GTP) (in reverse):
phosphoenolpyruvate + CO2 + GDP→oxaloacetate + GTP (EC 4.1.1.32)
QEN71_RS00130 +0.1
Pyruvate kinase (in reverse):
phosphoenolpyruvate + ADP + H+→pyruvate + ATP (EC 2.7.1.40)
QEN71_RS02430 +0.1
QEN71_RS12195 +0.1
QEN71_RS41440 +0.2
Phosphoenolpyruvate carboxykinase (GTP) (in reverse):
phosphoenolpyruvate + CO2 + IDP→oxaloacetate + ITP (EC 4.1.1.32)
QEN71_RS00130 +0.1
Alanine transaminase (in reverse):
pyruvate + L-glutamate→2-oxoglutarate + L-alanine (EC 2.6.1.2)
QEN71_RS22410 -1.9
Malate dehydrogenase (in reverse):
oxaloacetate + NADH + H+→(S)-malate + NAD+ (EC 1.1.1.37; 1.1.1.38)
QEN71_RS10905 -0.3
QEN71_RS17565 N.D.
QEN71_RS36375 +0.0
Malate dehydrogenase (oxaloacetate-decarboxylating):
(S)-malate + NAD+→pyruvate + CO2 + NADH (EC 1.1.1.38)
No genes
Alanine racemase:
L-alanine→D-alanine (EC 5.1.1.1; 5.1.1.10)
QEN71_RS06315 N.D.
Aspartate transaminase:
2-oxoglutarate + L-aspartate→L-glutamate + oxaloacetate (EC 2.6.1.1)
QEN71_RS00075 +0.1
QEN71_RS02890 -0.0
QEN71_RS03175 +0.1
QEN71_RS03275 +0.1
QEN71_RS06560 +0.2
QEN71_RS08880 +0.1
QEN71_RS10500 +0.1
QEN71_RS12205 -0.2
QEN71_RS12215 -0.5
QEN71_RS13030 -0.0
QEN71_RS17025 -0.0
QEN71_RS18160 -0.2
QEN71_RS18375 -0.4
QEN71_RS20720 +0.2
QEN71_RS21505 +0.2
QEN71_RS22410 -1.9
QEN71_RS23125 +0.1
QEN71_RS23470 -0.1
QEN71_RS24010 +0.0
QEN71_RS24645 -0.1
QEN71_RS30710 -0.0
QEN71_RS31640 +0.1
QEN71_RS32300 -0.4
QEN71_RS36905 +0.3
QEN71_RS38860 +0.1
QEN71_RS38900 +0.1
QEN71_RS38970 +0.4
Fumarate hydratase:
(S)-malate→fumarate + H2O (EC 4.2.1.2)
QEN71_RS04360 -0.2
QEN71_RS11740 -0.1
QEN71_RS23780 -0.8
pyruvate + coenzyme A + NAD+→CO2 + acetyl-CoA + NADH (EC 1.2.1.104)
QEN71_RS05730 N.D.
QEN71_RS23700 +0.0
QEN71_RS40215 -0.4
QEN71_RS40225 +0.1
Succinate dehydrogenase (ubiquinone) (in reverse):
fumarate[in] + a rhodoquinol→succinate[in] + a rhodoquinone (EC 1.3.5.1)
No genes
acetyl-CoA + succinate→acetate + succinyl-CoA (EC 2.8.3.18)
QEN71_RS07615 +0.5
succinate + propanoyl-CoA→succinyl-CoA + propanoate (EC 2.8.3.27)
No genes
Methylmalonyl-CoA mutase (in reverse):
succinyl-CoA→(R)-methylmalonyl-CoA (EC 5.4.99.2)
QEN71_RS01015 +0.0
QEN71_RS36165 +0.2
QEN71_RS36170 +0.0
Succinate--CoA ligase (ADP-forming) (in reverse):
succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A (EC 6.2.1.5)
QEN71_RS02350 -3.3
QEN71_RS02355 -3.4
QEN71_RS20400 -0.1
QEN71_RS20405 +0.2
QEN71_RS33990 +0.3
QEN71_RS33995 -0.0
Methylmalonyl-CoA epimerase:
(R)-methylmalonyl-CoA→(S)-methylmalonyl-CoA (EC 5.1.99.1)
No genes
Propionyl-CoA carboxylase (in reverse):
(S)-methylmalonyl-CoA + ADP + H+ + phosphate→propanoyl-CoA + ATP + hydrogen carbonate (EC 6.4.1.3)
QEN71_RS06140 N.D.
QEN71_RS17660 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information