| Reactions and Genes | Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days |
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| remove |
Aspartate kinase:
L-aspartate + ATP→L-aspartyl-4-phosphate + ADP (EC 2.7.2.4) |
| QEN71_RS06150 | -5.0 |
Aspartate-semialdehyde dehydrogenase (in reverse):
L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate (EC 1.2.1.11) |
| QEN71_RS17625 | N.D. |
| L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7) |
| QEN71_RS05940 | N.D. |
| QEN71_RS11050 | +0.2 |
| QEN71_RS20640 | -0.3 |
| QEN71_RS30495 | -0.2 |
| QEN71_RS34275 | -0.3 |
| QEN71_RS35845 | -0.8 |
| QEN71_RS35895 | +0.2 |
| QEN71_RS39630 | -0.4 |
| QEN71_RS41290 | +0.5 |
| (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8) |
| QEN71_RS26970 | N.D. |
Tetrahydrodipicolinate N-acetyltransferase:
(S)-2,3,4,5-tetrahydrodipicolinate + acetyl-CoA + H2O→L-2-acetamido-6-oxoheptanedioate + coenzyme A (EC 2.3.1.89) |
| No genes |
| L-2-acetamido-6-oxoheptanedioate + L-glutamate→N-acetyl-L,L-2,6-diaminopimelate + 2-oxoglutarate |
| No genes |
N-acetyldiaminopimelate deacetylase:
N-acetyl-L,L-2,6-diaminopimelate + H2O→L,L-diaminopimelate + acetate (EC 3.5.1.47) |
| No genes |
Diaminopimelate epimerase:
L,L-diaminopimelate→meso-diaminopimelate (EC 5.1.1.7) |
| QEN71_RS00365 | N.D. |
| QEN71_RS03330 | -1.7 |
| QEN71_RS08005 | -1.1 |
| QEN71_RS25975 | -0.1 |
Diaminopimelate decarboxylase:
meso-diaminopimelate + H+→L-lysine + CO2 (EC 4.1.1.20) |
| QEN71_RS28080 | -4.6 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information