| Reactions and Genes | Plant=Phaseolus_vulgaris; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days |
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| remove |
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate (EC 2.6.1.1) |
| QEN71_RS00075 | +0.1 |
| QEN71_RS02890 | -0.0 |
| QEN71_RS03175 | +0.1 |
| QEN71_RS03275 | +0.1 |
| QEN71_RS06560 | +0.2 |
| QEN71_RS08880 | +0.1 |
| QEN71_RS10500 | +0.1 |
| QEN71_RS12205 | -0.2 |
| QEN71_RS12215 | -0.5 |
| QEN71_RS13030 | -0.0 |
| QEN71_RS17025 | -0.0 |
| QEN71_RS18160 | -0.2 |
| QEN71_RS18375 | -0.4 |
| QEN71_RS20720 | +0.2 |
| QEN71_RS21505 | +0.2 |
| QEN71_RS22410 | -1.9 |
| QEN71_RS23125 | +0.1 |
| QEN71_RS23470 | -0.1 |
| QEN71_RS24010 | +0.0 |
| QEN71_RS24645 | -0.1 |
| QEN71_RS30710 | -0.0 |
| QEN71_RS31640 | +0.1 |
| QEN71_RS32300 | -0.4 |
| QEN71_RS36905 | +0.3 |
| QEN71_RS38860 | +0.1 |
| QEN71_RS38900 | +0.1 |
| QEN71_RS38970 | +0.4 |
Aspartate kinase:
L-aspartate + ATP→L-aspartyl-4-phosphate + ADP (EC 2.7.2.4) |
| QEN71_RS06150 | -5.0 |
Aspartate-semialdehyde dehydrogenase (in reverse):
L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate (EC 1.2.1.11) |
| QEN71_RS17625 | N.D. |
| L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7) |
| QEN71_RS05940 | N.D. |
| QEN71_RS11050 | +0.2 |
| QEN71_RS20640 | -0.3 |
| QEN71_RS30495 | -0.2 |
| QEN71_RS34275 | -0.3 |
| QEN71_RS35845 | -0.8 |
| QEN71_RS35895 | +0.2 |
| QEN71_RS39630 | -0.4 |
| QEN71_RS41290 | +0.5 |
Homoserine dehydrogenase (in reverse):
L-aspartate 4-semialdehyde + NAD(P)H + H+→L-homoserine + NAD(P)+ (EC 1.1.1.3) |
| QEN71_RS22405 | -6.4 |
Homoserine kinase:
L-homoserine + ATP→O-phospho-L-homoserine + ADP + H+ (EC 2.7.1.39) |
| QEN71_RS17850 | -5.3 |
Homoserine O-succinyltransferase:
L-homoserine + succinyl-CoA→O-succinyl-L-homoserine + coenzyme A (EC 2.3.1.46) |
| QEN71_RS42530 | -0.5 |
| (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8) |
| QEN71_RS26970 | N.D. |
Cystathionine gamma-synthase:
O-succinyl-L-homoserine + L-cysteine→L-cystathionine + H+ + succinate (EC 2.5.1.48) |
| QEN71_RS05200 | +0.2 |
| QEN71_RS17685 | +0.1 |
| QEN71_RS38310 | +0.0 |
| QEN71_RS42510 | +0.2 |
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase:
(S)-2,3,4,5-tetrahydrodipicolinate + succinyl-CoA + H2O→N-succinyl-2-amino-6-ketopimelate + coenzyme A (EC 2.3.1.117) |
| QEN71_RS06365 | N.D. |
Threonine synthase:
O-phospho-L-homoserine + H2O→L-threonine + phosphate (EC 4.2.3.1) |
| QEN71_RS18575 | -0.0 |
| QEN71_RS22400 | -5.2 |
| QEN71_RS40245 | N.D. |
| QEN71_RS40295 | N.D. |
| QEN71_RS41235 | +0.3 |
Cysteine-S-conjugate beta-lyase:
L-cystathionine + H2O→L-homocysteine + ammonium + pyruvate (EC 4.4.1.13) |
| No genes |
Succinyldiaminopimelate transaminase (in reverse):
N-succinyl-2-amino-6-ketopimelate + L-glutamate→N-succinyl-L,L-2,6-diaminopimelate + 2-oxoglutarate (EC 2.6.1.17) |
| QEN71_RS03130 | -0.0 |
| QEN71_RS04065 | -3.1 |
| QEN71_RS06370 | -0.3 |
| QEN71_RS23375 | N.D. |
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase:
L-homocysteine + 5-methyltetrahydropteroyl tri-L-glutamate→L-methionine + tetrahydropteroyl tri-L-glutamate (EC 2.1.1.14) |
| QEN71_RS19725 | -0.8 |
Methionine synthase:
L-homocysteine + a 5-methyltetrahydrofolate→L-methionine + a tetrahydrofolate (EC 2.1.1.13) |
| QEN71_RS01190 | +0.0 |
| QEN71_RS01195 | -0.2 |
Succinyl-diaminopimelate desuccinylase:
N-succinyl-L,L-2,6-diaminopimelate + H2O→L,L-diaminopimelate + succinate (EC 3.5.1.18) |
| QEN71_RS06355 | -2.8 |
| QEN71_RS22065 | +0.1 |
Diaminopimelate epimerase:
L,L-diaminopimelate→meso-diaminopimelate (EC 5.1.1.7) |
| QEN71_RS00365 | N.D. |
| QEN71_RS03330 | -1.7 |
| QEN71_RS08005 | -1.1 |
| QEN71_RS25975 | -0.1 |
Diaminopimelate decarboxylase:
meso-diaminopimelate + H+→L-lysine + CO2 (EC 4.1.1.20) |
| QEN71_RS28080 | -4.6 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information