MetaCyc Pathway: C4 photosynthetic carbon assimilation cycle, NAD-ME type in Paraburkholderia sabiae LMG 24235

Add experiment(s):


Reactions and Genes Plant=Oryza_sativa; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
remove
Carbonate dehydratase (in reverse):
CO2 + H2O→hydrogen carbonate + H+ (EC 4.2.1.1)
QEN71_RS01130 N.D.
QEN71_RS13420 N.D.
QEN71_RS14285 -0.4
QEN71_RS21500 +0.2
QEN71_RS31255 -0.3
QEN71_RS35405 -0.2
QEN71_RS37755 -0.0
QEN71_RS37865 -0.7
Phosphoenolpyruvate carboxylase (in reverse):
hydrogen carbonate + phosphoenolpyruvate→oxaloacetate + phosphate (EC 4.1.1.31)
QEN71_RS24955 -0.6
QEN71_RS33985 +0.0
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate (EC 2.6.1.1)
QEN71_RS00075 -0.1
QEN71_RS02890 -0.0
QEN71_RS03175 +0.2
QEN71_RS03275 +0.1
QEN71_RS06560 +0.0
QEN71_RS08880 +0.0
QEN71_RS10500 +0.1
QEN71_RS12205 +0.1
QEN71_RS12215 +0.1
QEN71_RS13030 -0.1
QEN71_RS17025 -0.0
QEN71_RS18160 -0.1
QEN71_RS18375 -0.0
QEN71_RS20720 -0.4
QEN71_RS21505 +0.1
QEN71_RS22410 -0.3
QEN71_RS23125 +0.1
QEN71_RS23470 +0.1
QEN71_RS24010 +0.1
QEN71_RS24645 -0.1
QEN71_RS30710 -0.8
QEN71_RS31640 -1.8
QEN71_RS32300 -0.2
QEN71_RS36905 +0.2
QEN71_RS38860 +0.1
QEN71_RS38900 +0.4
QEN71_RS38970 +0.0
L-aspartate[in]→L-aspartate[out]
No genes
Aspartate transaminase:
L-aspartate + 2-oxoglutarate→oxaloacetate + L-glutamate (EC 2.6.1.1)
QEN71_RS00075 -0.1
QEN71_RS02890 -0.0
QEN71_RS03175 +0.2
QEN71_RS03275 +0.1
QEN71_RS06560 +0.0
QEN71_RS08880 +0.0
QEN71_RS10500 +0.1
QEN71_RS12205 +0.1
QEN71_RS12215 +0.1
QEN71_RS13030 -0.1
QEN71_RS17025 -0.0
QEN71_RS18160 -0.1
QEN71_RS18375 -0.0
QEN71_RS20720 -0.4
QEN71_RS21505 +0.1
QEN71_RS22410 -0.3
QEN71_RS23125 +0.1
QEN71_RS23470 +0.1
QEN71_RS24010 +0.1
QEN71_RS24645 -0.1
QEN71_RS30710 -0.8
QEN71_RS31640 -1.8
QEN71_RS32300 -0.2
QEN71_RS36905 +0.2
QEN71_RS38860 +0.1
QEN71_RS38900 +0.4
QEN71_RS38970 +0.0
Malate dehydrogenase (in reverse):
oxaloacetate + NADH + H+→(S)-malate + NAD+ (EC 1.1.1.37; 1.1.1.38)
QEN71_RS10905 -0.3
QEN71_RS17565 N.D.
QEN71_RS36375 +0.4
Malate dehydrogenase (oxaloacetate-decarboxylating):
(S)-malate + NAD+→CO2 + pyruvate + NADH (EC 1.1.1.38)
No genes
Alanine transaminase (in reverse):
pyruvate + L-glutamate→L-alanine + 2-oxoglutarate (EC 2.6.1.2)
QEN71_RS22410 -0.3
L-alanine[in]→L-alanine[out]
No genes
Alanine transaminase (in reverse):
L-alanine + 2-oxoglutarate→pyruvate + L-glutamate (EC 2.6.1.2)
QEN71_RS22410 -0.3
Pyruvate, phosphate dikinase:
pyruvate + ATP + phosphate→phosphoenolpyruvate + AMP + diphosphate + H+ (EC 2.7.9.1)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information