MetaCyc Pathway: photorespiration III in Variovorax sp. OAS795

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Reactions and Genes Glycolic Acid (C)
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D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
ABID97_RS12845 +0.1
Phosphoglycolate phosphatase:
2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
ABID97_RS05240 -0.3
ABID97_RS07650 +0.4
ABID97_RS08255 +0.1
ABID97_RS09545 -0.6
ABID97_RS12870 N.D.
ABID97_RS13695 +0.2
Glycolate dehydrogenase:
glycolate[in] + an electron-transfer quinone→glyoxylate[in] + an electron-transfer quinol (EC 1.1.99.14)
ABID97_RS03650 -5.2
ABID97_RS03655 -4.7
ABID97_RS03660 -6.0
ABID97_RS15850 +0.1
Glycine transaminase (in reverse):
glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase:
glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
ABID97_RS15840 +0.4
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
No genes
Glycerate dehydrogenase (in reverse):
3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
No genes
Glycerate kinase:
D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)
ABID97_RS22180 -0.0
ABID97_RS27670 -4.8
Glycine hydroxymethyltransferase (in reverse):
glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
ABID97_RS17890 N.D.

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information