MetaCyc Pathway: palmitate biosynthesis III in Serratia liquefaciens MT49

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Reactions and Genes Cadmium acetate 40 uM, aerobic
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3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
an acetoacetyl-[acp] + NADPH + H+→a (3R)-3-hydroxybutanoyl-[acp] + NADP+ (EC 1.1.1.100)
IAI46_00395 -0.1
IAI46_02715 +0.1
IAI46_02810 -0.1
IAI46_03145 +0.3
IAI46_04100 +0.0
IAI46_05430 +0.1
IAI46_05725 -0.0
IAI46_07125 +0.4
IAI46_09790 N.D.
IAI46_10535 +0.0
IAI46_12450 +0.2
IAI46_17490 -0.0
IAI46_19920 -0.2
IAI46_21070 -0.1
IAI46_22865 +0.1
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxybutanoyl-[acp]→a (2E)-but-2-enoyl-[acp] + H2O (EC 4.2.1.59)
IAI46_08860 N.D.
IAI46_12205 -0.6
IAI46_20205 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-but-2-enoyl-[acp] + NADPH + H+→a butanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a butanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxohexanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
IAI46_04090 +0.0
IAI46_04105 +0.0
IAI46_08850 -0.1
IAI46_09800 +1.4
IAI46_15470 +0.2
IAI46_17995 N.D.
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxohexanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyhexanoyl-[acp] + NADP+ (EC 1.1.1.100)
IAI46_00395 -0.1
IAI46_02715 +0.1
IAI46_02810 -0.1
IAI46_03145 +0.3
IAI46_04100 +0.0
IAI46_05430 +0.1
IAI46_05725 -0.0
IAI46_07125 +0.4
IAI46_09790 N.D.
IAI46_10535 +0.0
IAI46_12450 +0.2
IAI46_17490 -0.0
IAI46_19920 -0.2
IAI46_21070 -0.1
IAI46_22865 +0.1
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyhexanoyl-[acp]→a (2E)-hex-2-enoyl-[acp] + H2O (EC 4.2.1.59)
IAI46_08860 N.D.
IAI46_12205 -0.6
IAI46_20205 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-hex-2-enoyl-[acp] + NADPH + H+→a hexanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a hexanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxooctanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
IAI46_04090 +0.0
IAI46_04105 +0.0
IAI46_08850 -0.1
IAI46_09800 +1.4
IAI46_15470 +0.2
IAI46_17995 N.D.
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxooctanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyoctanoyl-[acp] + NADP+ (EC 1.1.1.100)
IAI46_00395 -0.1
IAI46_02715 +0.1
IAI46_02810 -0.1
IAI46_03145 +0.3
IAI46_04100 +0.0
IAI46_05430 +0.1
IAI46_05725 -0.0
IAI46_07125 +0.4
IAI46_09790 N.D.
IAI46_10535 +0.0
IAI46_12450 +0.2
IAI46_17490 -0.0
IAI46_19920 -0.2
IAI46_21070 -0.1
IAI46_22865 +0.1
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyoctanoyl-[acp]→a (2E)-oct-2-enoyl-[acp] + H2O (EC 4.2.1.59)
IAI46_08860 N.D.
IAI46_12205 -0.6
IAI46_20205 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-oct-2-enoyl-[acp] + NADPH + H+→an octanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
an octanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxodecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
IAI46_04090 +0.0
IAI46_04105 +0.0
IAI46_08850 -0.1
IAI46_09800 +1.4
IAI46_15470 +0.2
IAI46_17995 N.D.
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxodecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxydecanoyl-[acp] + NADP+ (EC 1.1.1.100)
IAI46_00395 -0.1
IAI46_02715 +0.1
IAI46_02810 -0.1
IAI46_03145 +0.3
IAI46_04100 +0.0
IAI46_05430 +0.1
IAI46_05725 -0.0
IAI46_07125 +0.4
IAI46_09790 N.D.
IAI46_10535 +0.0
IAI46_12450 +0.2
IAI46_17490 -0.0
IAI46_19920 -0.2
IAI46_21070 -0.1
IAI46_22865 +0.1
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydecanoyl-[acp]→a (2E)-dec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
IAI46_08860 N.D.
IAI46_12205 -0.6
IAI46_20205 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-dec-2-enoyl-[acp] + NADPH + H+→a decanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a decanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxododecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
IAI46_04090 +0.0
IAI46_04105 +0.0
IAI46_08850 -0.1
IAI46_09800 +1.4
IAI46_15470 +0.2
IAI46_17995 N.D.
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxododecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxydodecanoyl-[acp] + NADP+ (EC 1.1.1.100)
IAI46_00395 -0.1
IAI46_02715 +0.1
IAI46_02810 -0.1
IAI46_03145 +0.3
IAI46_04100 +0.0
IAI46_05430 +0.1
IAI46_05725 -0.0
IAI46_07125 +0.4
IAI46_09790 N.D.
IAI46_10535 +0.0
IAI46_12450 +0.2
IAI46_17490 -0.0
IAI46_19920 -0.2
IAI46_21070 -0.1
IAI46_22865 +0.1
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxydodecanoyl-[acp]→a (2E)-dodec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
IAI46_08860 N.D.
IAI46_12205 -0.6
IAI46_20205 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-dodec-2-enoyl-[acp] + NADPH + H+→a dodecanoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a dodecanoyl-[acp] + a malonyl-[acp] + H+→a 3-oxotetradecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
IAI46_04090 +0.0
IAI46_04105 +0.0
IAI46_08850 -0.1
IAI46_09800 +1.4
IAI46_15470 +0.2
IAI46_17995 N.D.
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxotetradecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxytetradecanoyl-[acp] + NADP+ (EC 1.1.1.100)
IAI46_00395 -0.1
IAI46_02715 +0.1
IAI46_02810 -0.1
IAI46_03145 +0.3
IAI46_04100 +0.0
IAI46_05430 +0.1
IAI46_05725 -0.0
IAI46_07125 +0.4
IAI46_09790 N.D.
IAI46_10535 +0.0
IAI46_12450 +0.2
IAI46_17490 -0.0
IAI46_19920 -0.2
IAI46_21070 -0.1
IAI46_22865 +0.1
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxytetradecanoyl-[acp]→a (2E)-tetradec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
IAI46_08860 N.D.
IAI46_12205 -0.6
IAI46_20205 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-tetradec-2-enoyl-[acp] + NADPH + H+→a myristoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
No genes
Beta-ketoacyl-acyl-carrier-protein synthase II:
a myristoyl-[acp] + a malonyl-[acp] + H+→a 3-oxohexadecanoyl-[acp] + a soluble [acyl-carrier protein] + CO2 (EC 2.3.1.179; 2.3.1.41)
IAI46_04090 +0.0
IAI46_04105 +0.0
IAI46_08850 -0.1
IAI46_09800 +1.4
IAI46_15470 +0.2
IAI46_17995 N.D.
3-oxoacyl-[acyl-carrier-protein] reductase (in reverse):
a 3-oxohexadecanoyl-[acp] + NADPH + H+→a (3R)-3-hydroxyhexadecanoyl-[acp] + NADP+ (EC 1.1.1.100)
IAI46_00395 -0.1
IAI46_02715 +0.1
IAI46_02810 -0.1
IAI46_03145 +0.3
IAI46_04100 +0.0
IAI46_05430 +0.1
IAI46_05725 -0.0
IAI46_07125 +0.4
IAI46_09790 N.D.
IAI46_10535 +0.0
IAI46_12450 +0.2
IAI46_17490 -0.0
IAI46_19920 -0.2
IAI46_21070 -0.1
IAI46_22865 +0.1
3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase:
a (3R)-3-hydroxyhexadecanoyl-[acp]→a (2E)-hexadec-2-enoyl-[acp] + H2O (EC 4.2.1.59)
IAI46_08860 N.D.
IAI46_12205 -0.6
IAI46_20205 N.D.
Enoyl-[acyl-carrier-protein] reductase (NADPH, B-specific) (in reverse):
a (2E)-hexadec-2-enoyl-[acp] + NADPH + H+→a palmitoyl-[acp] + NADP+ (EC 1.3.1.10; 1.3.1.104; 1.3.1.39)
No genes
Oleoyl-[acyl-carrier-protein] hydrolase:
a palmitoyl-[acp] + H2O→palmitate + a soluble [acyl-carrier protein] + H+ (EC 3.1.2.14)
No genes
Long-chain-fatty-acid--CoA ligase:
palmitate + ATP + coenzyme A→palmitoyl-CoA + AMP + diphosphate (EC 6.2.1.3)
IAI46_03370 +0.1
IAI46_12690 -0.2
IAI46_14535 +0.1

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information