MetaCyc Pathway: D-xylose degradation IV in Escherichia coli BW25113
| Reactions and Genes | succinate (C) |
|---|---|
| remove | |
| D-xylopyranose + NAD(P)+→D-xylono-1,5-lactone + NAD(P)H + H+ (EC 1.1.1.359) | |
| No genes | |
| D-xylono-1,5-lactone + H2O→D-xylonate + H+ (EC 3.1.1.110) | |
| No genes | |
| Xylonate dehydratase: D-xylonate→2-dehydro-3-deoxy-D-pentonate + H2O (EC 4.2.1.82) | |
| b0269 (yagF) | +0.0 |
| b4297 (yjhG) | +0.0 |
| 2-dehydro-3-deoxy-D-pentonate aldolase: 2-dehydro-3-deoxy-D-pentonate→glycolaldehyde + pyruvate (EC 4.1.2.28) | |
| b0268 (yagE) | -0.4 |
| b4298 (yjhH) | -0.0 |
| glycolaldehyde + an oxidized electron carrier→glycolate + a reduced two electron carrier + H+ | |
| No genes | |
| Glyoxylate reductase: glycolate + NAD+→glyoxylate + NADH + H+ (EC 1.1.1.26) | |
| No genes | |
| Malate synthase: glyoxylate + acetyl-CoA + H2O→(S)-malate + coenzyme A + H+ (EC 2.3.3.9) | |
| b2976 (glcB) | -0.2 |
| b4014 (aceB) | +1.1 |
Links:
Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information