MetaCyc Pathway: superpathway of L-lysine, L-threonine and L-methionine biosynthesis I in Variovorax sp. OAS795

Add experiment(s):


Reactions and Genes L-Threonine (C)
remove
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate
(EC 2.6.1.1)
ABID97_RS04080 -0.3
ABID97_RS05635 -0.3
ABID97_RS06550 +0.0
ABID97_RS10885 -1.9
ABID97_RS13335 -0.0
ABID97_RS16605 -1.0
ABID97_RS17960 -0.5
ABID97_RS18035 +0.4
ABID97_RS20530 -0.3
ABID97_RS21960 +0.5
ABID97_RS24840 -0.0
ABID97_RS27360 +0.1
ABID97_RS27595 +0.2
ABID97_RS27655 -0.3
Aspartate kinase:
L-aspartate + ATP→L-aspartyl-4-phosphate + ADP
(EC 2.7.2.4)
ABID97_RS17825 N.D.
Aspartate-semialdehyde dehydrogenase (in reverse):
L-aspartyl-4-phosphate + NADPH + H+→L-aspartate 4-semialdehyde + NADP+ + phosphate
(EC 1.2.1.11)
ABID97_RS08450 N.D.
L-aspartate 4-semialdehyde + pyruvate→(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H+ + H2O (EC 4.3.3.7)
ABID97_RS10915 -0.1
ABID97_RS20125 +3.8
ABID97_RS25855 -0.0
ABID97_RS26325 -0.0
ABID97_RS26440 N.D.
Homoserine dehydrogenase (in reverse):
L-aspartate 4-semialdehyde + NAD(P)H + H+→L-homoserine + NAD(P)+
(EC 1.1.1.3)
ABID97_RS10890 N.D.
ABID97_RS12480 -4.7
Homoserine kinase:
L-homoserine + ATP→O-phospho-L-homoserine + ADP + H+
(EC 2.7.1.39)
ABID97_RS09170 N.D.
ABID97_RS25765 -0.1
Homoserine O-succinyltransferase:
L-homoserine + succinyl-CoA→O-succinyl-L-homoserine + coenzyme A
(EC 2.3.1.46)
No genes
(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + NAD(P)H + H+→(S)-2,3,4,5-tetrahydrodipicolinate + NAD(P)+ + H2O (EC 1.17.1.8)
ABID97_RS04515 N.D.
Cystathionine gamma-synthase:
O-succinyl-L-homoserine + L-cysteine→L-cystathionine + H+ + succinate
(EC 2.5.1.48)
ABID97_RS10100 -0.0
ABID97_RS15510 +0.4
ABID97_RS21630 N.D.
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase:
(S)-2,3,4,5-tetrahydrodipicolinate + succinyl-CoA + H2ON-succinyl-2-amino-6-ketopimelate + coenzyme A
(EC 2.3.1.117)
ABID97_RS16635 N.D.
Threonine synthase:
O-phospho-L-homoserine + H2O→L-threonine + phosphate
(EC 4.2.3.1)
ABID97_RS10895 N.D.
ABID97_RS25760 N.D.
Cysteine-S-conjugate beta-lyase:
L-cystathionine + H2O→L-homocysteine + ammonium + pyruvate
(EC 4.4.1.13)
ABID97_RS13370 -0.3
Succinyldiaminopimelate transaminase (in reverse):
N-succinyl-2-amino-6-ketopimelate + L-glutamateN-succinyl-L,L-2,6-diaminopimelate + 2-oxoglutarate
(EC 2.6.1.17)
ABID97_RS16630 +0.7
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase:
L-homocysteine + 5-methyltetrahydropteroyl tri-L-glutamate→L-methionine + tetrahydropteroyl tri-L-glutamate
(EC 2.1.1.14)
ABID97_RS10445 +0.0
ABID97_RS19395 +0.1
Methionine synthase:
L-homocysteine + a 5-methyltetrahydrofolate→L-methionine + a tetrahydrofolate
(EC 2.1.1.13)
ABID97_RS03450 -2.7
ABID97_RS03470 -3.2
Succinyl-diaminopimelate desuccinylase:
N-succinyl-L,L-2,6-diaminopimelate + H2O→L,L-diaminopimelate + succinate
(EC 3.5.1.18)
ABID97_RS16645 N.D.
Diaminopimelate epimerase:
L,L-diaminopimelate→meso-diaminopimelate
(EC 5.1.1.7)
ABID97_RS06135 N.D.
ABID97_RS07065 -0.2
Diaminopimelate decarboxylase:
meso-diaminopimelate + H+→L-lysine + CO2
(EC 4.1.1.20)
ABID97_RS23305 N.D.

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information