MetaCyc Pathway: photorespiration III in Pseudomonas simiae WCS417

Reactions and Genes	Neomycin 0.04 mg/ml
D-ribulose-1,5-bisphosphate + dioxygen→2-phosphoglycolate + 3-phospho-D-glycerate + 2 H+
No genes
Phosphoglycolate phosphatase: 2-phosphoglycolate + H2O→glycolate + phosphate (EC 3.1.3.18)
PS417_08095	N.D.
PS417_21475	+0.2
PS417_00235	-0.1
PS417_25730	+1.3
Glycolate dehydrogenase: glycolate[in] + an electron-transfer quinone→glyoxylate[in] + an electron-transfer quinol (EC 1.1.99.14)
No genes
Glycine transaminase (in reverse): glyoxylate + L-glutamate→glycine + 2-oxoglutarate (EC 2.6.1.4)
No genes
Serine--glyoxylate transaminase: glyoxylate + L-serine→glycine + 3-hydroxypyruvate (EC 2.6.1.45)
No genes
glycine + NAD+ + a tetrahydrofolate→a 5,10-methylenetetrahydrofolate + ammonium + CO2 + NADH (EC 1.4.1.27)
PS417_08905	N.D.
PS417_22360	+0.1
PS417_27255	+0.3
Glycerate dehydrogenase (in reverse): 3-hydroxypyruvate + NADH + H+→D-glycerate + NAD+ (EC 1.1.1.29)
PS417_04530	-0.7
Glycerate kinase: D-glycerate + ATP→3-phospho-D-glycerate + ADP + H+ (EC 2.7.1.31)
PS417_08795	+0.1
PS417_13745	-0.1
PS417_13970	-0.0
PS417_22470	N.D.
Glycine hydroxymethyltransferase (in reverse): glycine + a 5,10-methylenetetrahydrofolate + H2O→L-serine + a tetrahydrofolate (EC 2.1.2.1)
PS417_24275	-0.1
PS417_24280	N.D.
PS417_26195	-0.1

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information