MetaCyc Pathway: putrescine biosynthesis II in Pseudomonas syringae pv. syringae B728a ΔmexB

Add experiment(s):


Reactions and Genes KB with Carbenicillin 3.1 ug/ml
remove
Arginine decarboxylase:
L-arginine + H+→agmatine + CO2 (EC 4.1.1.19)
Psyr_2547 +0.2
Psyr_4247 -0.2
Psyr_4381 -1.2
Agmatine deiminase:
agmatine + H2O→N-carbamoylputrescine + ammonium (EC 3.5.3.12)
Psyr_4932 -0.8
N-carbamoylputrescine amidase:
N-carbamoylputrescine + 2 H+ + H2O→putrescine + ammonium + CO2 (EC 3.5.1.53)
Psyr_4933 -0.6

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information