MetaCyc Pathway: 2-deoxy-D-ribose degradation II in Variovorax sp. OAS795

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Reactions and Genes 2-Deoxy-D-Ribose (C)
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2-deoxy-β-D-ribopyranose + 2 an oxidized c-type cytochrome→2-deoxy-ribono-1,5-lactone + 2 a reduced c-type cytochrome + 2 H+ (EC 1.1.2.M2)
ABID97_RS29115 +0.3
2-deoxy-ribono-1,5-lactone + H2O→2-deoxy-D-ribonate + H+
ABID97_RS28795 -2.0
2-deoxy-D-ribonate + NAD+→2-deoxy-3-dehydro-D-ribonate + NADH + H+ (EC 1.1.1.M55)
ABID97_RS28805 N.D.
2-deoxy-3-dehydro-D-ribonate + acetyl-CoA→acetoacetate + D-glyceroyl-CoA
ABID97_RS28800 N.D.
Acetoacetate--CoA ligase:
acetoacetate + ATP + coenzyme A→acetoacetyl-CoA + AMP + diphosphate (EC 6.2.1.16)
ABID97_RS03180 -1.1
ABID97_RS17465 +0.1
ABID97_RS25135 -0.3
D-glyceroyl-CoA + H2O→D-glycerate + coenzyme A + H+
No genes
Acetyl-CoA C-acyltransferase (in reverse):
acetoacetyl-CoA + coenzyme A→2 acetyl-CoA (EC 2.3.1.16; 2.3.1.9)
ABID97_RS04675 -0.0
ABID97_RS05875 N.D.
ABID97_RS06005 +0.1
ABID97_RS10975 +0.0
ABID97_RS11335 +0.4
ABID97_RS11380 +0.1
ABID97_RS12420 N.D.
ABID97_RS15750 -0.3
ABID97_RS18615 -0.0
ABID97_RS18775 +0.2
ABID97_RS20240 -0.0
ABID97_RS24190 -0.1
ABID97_RS25195 -0.0
ABID97_RS26575 N.D.
ABID97_RS27835 -0.6
ABID97_RS28230 +1.2
ABID97_RS28270 -0.1
ABID97_RS28430 -0.2
D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)
No genes

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information