MetaCyc Pathway: ammonia assimilation cycle III in Pseudomonas putida KT2440

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Reactions and Genes Growth with no stress
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Glutamate synthase (NADPH):
L-glutamine + H2O→ammonia + L-glutamate + H+ (EC 1.4.1.13; 1.4.1.14; 1.4.7.1; 2.6.1.85; 3.5.1.2; 3.5.1.38; 4.1.3.27; 4.3.2.10; 4.3.3.6; 6.3.4.2; 6.3.5.13; 6.3.5.2; 6.3.5.4; 6.3.5.5; 6.3.5.6; 6.3.5.7)
PP_0269 +0.2
PP_0417 -2.2
PP_0420 -0.4
PP_0511 +0.1
PP_0613 -0.0
PP_0727 -0.0
PP_0930 N.D.
PP_0931 N.D.
PP_0932 N.D.
PP_0991 +0.1
PP_1032 N.D.
PP_1060 +0.1
PP_1374 +0.7
PP_1460 +0.1
PP_1610 N.D.
PP_1691 -0.2
PP_1750 +0.1
PP_1842 +0.0
PP_2323 +1.4
PP_2329 +0.2
PP_2447 -0.3
PP_2453 -0.2
PP_3464 +0.3
PP_3598 -0.4
PP_4037 -0.2
PP_4723 +0.2
PP_4724 -0.7
PP_5075 -0.0
PP_5076 +0.6
Glutamate synthase (NADPH) (in reverse):
ammonia + 2-oxoglutarate + NADPH + 2 H+→L-glutamate + NADP+ + H2O (EC 1.4.1.13; 1.4.1.14)
PP_0511 +0.1
PP_0991 +0.1
PP_1374 +0.7
PP_1460 +0.1
PP_1691 -0.2
PP_2323 +1.4
PP_2447 -0.3
PP_3464 +0.3
PP_4037 -0.2
PP_5075 -0.0
PP_5076 +0.6
Glutamate--ammonia ligase:
L-glutamate + ammonium + ATP→L-glutamine + ADP + H+ + phosphate (EC 6.3.1.2)
PP_2178 -0.0
PP_3148 +0.2
PP_4399 -0.3
PP_4547 +0.0
PP_5046 N.D.
PP_5183 +0.0
PP_5184 -0.2
PP_5299 -0.1

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information