MetaCyc Pathway: anaerobic energy metabolism (invertebrates, mitochondrial) in Agrobacterium fabrum C58

Reactions and Genes	Plant=Tomato; PlantTreatment=None; Sample=root; GrowthSubstrate=agar; Collection=Direct
Malate dehydrogenase (oxaloacetate-decarboxylating): (S)-malate + NAD+→CO2 + pyruvate + NADH (EC 1.1.1.38)
Atu1652	N.D.
Fumarate hydratase: (S)-malate→fumarate + H2O (EC 4.2.1.2)
Atu1616	N.D.
pyruvate + coenzyme A + NAD+→CO2 + acetyl-CoA + NADH (EC 1.2.1.104)
Atu1429	N.D.
Atu1430	N.D.
Atu1432	N.D.
Succinate dehydrogenase (ubiquinone) (in reverse): fumarate[in] + a rhodoquinol→succinate[in] + a rhodoquinone (EC 1.3.5.1)
No genes
acetyl-CoA + succinate→acetate + succinyl-CoA (EC 2.8.3.18)
Atu0396	+0.2
succinate + propanoyl-CoA→succinyl-CoA + propanoate (EC 2.8.3.27)
No genes
Methylmalonyl-CoA mutase (in reverse): succinyl-CoA→(R)-methylmalonyl-CoA (EC 5.4.99.2)
Atu3580	-1.3
Succinate--CoA ligase (ADP-forming) (in reverse): succinyl-CoA + ADP + phosphate→succinate + ATP + coenzyme A (EC 6.2.1.5)
Atu2637	N.D.
Atu2638	N.D.
Methylmalonyl-CoA epimerase: (R)-methylmalonyl-CoA→(S)-methylmalonyl-CoA (EC 5.1.99.1)
Atu3579	-1.2
Propionyl-CoA carboxylase (in reverse): (S)-methylmalonyl-CoA + ADP + H+ + phosphate→propanoyl-CoA + ATP + hydrogen carbonate (EC 6.4.1.3)
Atu0020	N.D.
Atu3581	+0.0
Atu3586	-0.6
Atu3630	N.D.

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information