MetaCyc Pathway: 2-deoxy-D-ribose degradation II in Pseudomonas putida KT2440

Reactions and Genes	Heptanoic (C)
2-deoxy-β-D-ribopyranose + 2 an oxidized c-type cytochrome→2-deoxy-ribono-1,5-lactone + 2 a reduced c-type cytochrome + 2 H+ (EC 1.1.2.M2)
PP_2477	-0.4
PP_3621	-0.2
PP_3622	+0.1
2-deoxy-ribono-1,5-lactone + H2O→2-deoxy-D-ribonate + H+
No genes
2-deoxy-D-ribonate + NAD+→2-deoxy-3-dehydro-D-ribonate + NADH + H+ (EC 1.1.1.M55)
No genes
2-deoxy-3-dehydro-D-ribonate + acetyl-CoA→acetoacetate + D-glyceroyl-CoA
No genes
Acetoacetate--CoA ligase: acetoacetate + ATP + coenzyme A→acetoacetyl-CoA + AMP + diphosphate (EC 6.2.1.16)
PP_3071	-0.0
PP_3458	-0.1
PP_4549	-3.0
PP_4550	-0.7
D-glyceroyl-CoA + H2O→D-glycerate + coenzyme A + H+
No genes
Acetyl-CoA C-acyltransferase (in reverse): acetoacetyl-CoA + coenzyme A→2 acetyl-CoA (EC 2.3.1.16; 2.3.1.9)
PP_0582	+0.3
PP_1377	-0.1
PP_2051	-0.0
PP_2137	-0.9
PP_2215	-0.1
PP_3280	-0.0
PP_3355	+0.0
PP_3754	-0.8
PP_4636	+0.2
D-glycerate + ATP→2-phospho-D-glycerate + ADP + H+ (EC 2.7.1.165)
PP_3178	+0.0

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information