MetaCyc Pathway: aerobic respiration I (cytochrome c) in Agrobacterium fabrum C58

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Reactions and Genes Ferulic Acid (C)
remove
NADH[in] + 5 H+[in] + a ubiquinone→a ubiquinol + NAD+[in] + 4 H+[out] (EC 7.1.1.2)
Atu1268 N.D.
Atu1269 N.D.
Atu1272 N.D.
Atu1274 N.D.
Atu1275 N.D.
Atu1276 N.D.
Atu1277 N.D.
Atu1278 N.D.
Atu1279 N.D.
Atu1280 N.D.
Atu1281 N.D.
Atu1282 N.D.
Atu1283 N.D.
Atu2023 +0.1
Succinate dehydrogenase (ubiquinone):
succinate[in] + a ubiquinone→a ubiquinol + fumarate[in] (EC 1.3.5.1)
Atu2642 N.D.
Atu2643 N.D.
a ubiquinol + 2 an oxidized c-type cytochrome[out] + 2 H+[in]→2 a reduced c-type cytochrome[out] + 4 H+[out] + a ubiquinone (EC 7.1.1.8)
No genes
4 a reduced c-type cytochrome[out] + dioxygen[in] + 8 H+[in]→2 H2O[in] + 4 an oxidized c-type cytochrome[out] + 4 H+[out] (EC 7.1.1.9)
Atu0767 -1.0
Atu0768 -1.3
Atu0769 -0.7
Atu0771 -1.4
Atu1534 +0.4
Atu1535 -0.1
Atu1536 -0.1
Atu1537 -0.0
Atu8094 -0.0

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Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information