MetaCyc Pathway: C4 photosynthetic carbon assimilation cycle, NAD-ME type in Pseudomonas simiae WCS417

Add experiment(s):


Reactions and Genes soil sample 4; outgrowth in LB
remove
Carbonate dehydratase (in reverse):
CO2 + H2O→hydrogen carbonate + H+ (EC 4.2.1.1)
PS417_07350 N.D.
PS417_28330 -0.6
PS417_00285 +0.3
PS417_03310 -4.3
Phosphoenolpyruvate carboxylase (in reverse):
hydrogen carbonate + phosphoenolpyruvate→oxaloacetate + phosphate (EC 4.1.1.31)
PS417_06060 -0.3
Aspartate transaminase (in reverse):
oxaloacetate + L-glutamate→L-aspartate + 2-oxoglutarate (EC 2.6.1.1)
PS417_08560 -0.1
PS417_09070 +0.5
PS417_09120 -0.2
PS417_11840 +0.1
PS417_12775 +0.0
PS417_12985 -0.9
PS417_13545 +0.6
PS417_14865 -0.1
PS417_15040 -0.3
PS417_15990 -0.4
PS417_19025 +0.1
PS417_19385 -0.0
PS417_19910 +0.3
PS417_21030 +0.5
PS417_21275 +3.1
PS417_23120 -0.1
PS417_27730 +0.1
PS417_28165 +0.2
L-aspartate[in]→L-aspartate[out]
No genes
Aspartate transaminase:
L-aspartate + 2-oxoglutarate→oxaloacetate + L-glutamate (EC 2.6.1.1)
PS417_08560 -0.1
PS417_09070 +0.5
PS417_09120 -0.2
PS417_11840 +0.1
PS417_12775 +0.0
PS417_12985 -0.9
PS417_13545 +0.6
PS417_14865 -0.1
PS417_15040 -0.3
PS417_15990 -0.4
PS417_19025 +0.1
PS417_19385 -0.0
PS417_19910 +0.3
PS417_21030 +0.5
PS417_21275 +3.1
PS417_23120 -0.1
PS417_27730 +0.1
PS417_28165 +0.2
Malate dehydrogenase (in reverse):
oxaloacetate + NADH + H+→(S)-malate + NAD+ (EC 1.1.1.37; 1.1.1.38)
No genes
Malate dehydrogenase (oxaloacetate-decarboxylating):
(S)-malate + NAD+→CO2 + pyruvate + NADH (EC 1.1.1.38)
No genes
Alanine transaminase (in reverse):
pyruvate + L-glutamate→L-alanine + 2-oxoglutarate (EC 2.6.1.2)
PS417_08560 -0.1
PS417_21975 -0.0
L-alanine[in]→L-alanine[out]
No genes
Alanine transaminase (in reverse):
L-alanine + 2-oxoglutarate→pyruvate + L-glutamate (EC 2.6.1.2)
PS417_08560 -0.1
Pyruvate, phosphate dikinase:
pyruvate + ATP + phosphate→phosphoenolpyruvate + AMP + diphosphate + H+ (EC 2.7.9.1)
No genes

Links:

Candidate genes for each reaction are identified from best hits to MetaCyc; by matching EC numbers (which are assigned by TIGRFam, SEED, or best hits to KEGG); or by matching SEED roles to KEGG reactions to MetaCyc reactions. See the "Protein" tab of each gene for more information