Fitness data for PP_5679 in Pseudomonas putida KT2440

protein of unknown function
SEED: Error-prone, lesion bypass DNA polymerase V (UmuC)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source ferulate (C); with MOPS -0.6 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -2.4 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.5 -2.7 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.3 compare
pH pH 6 -0.4 -2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.4 -2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -1.5 compare
carbon source 1,3-Butandiol (C) -0.4 -1.8 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and 4-azido-L-phenylalanine 10 mM -0.4 -2.4 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -1.9 compare
nitrogen source nitrogen source nitrite 1mM -0.4 -1.8 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.0 compare
nitrogen source nitrate (N) +0.4 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +1.6 compare
phage P. putida PUT 7 MOI 1 +0.4 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.5 +2.1 compare
carbon source Valerolactone (C) +0.5 +2.4 compare
phage P. putida Sci small MOI 0.1 +0.6 +2.6 compare
phage P. putida Missley MOI 0.1 +0.7 +4.2 compare
nitrogen source 2,6-diaminopimelic (N) +0.8 +3.9 compare