Fitness data for PP_5645 in Pseudomonas putida KT2440

conserved protein of unknown function

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.5)


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group condition fitness t score  
carbon source Valerolactone (C) -0.8 -2.6 compare
nitrogen source Propandiamine (N) -0.8 -3.0 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.6 -2.1 compare
reactor 72hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 30% DO with 20% v/v oleyl alcohol overlay -0.6 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.5 -2.0 compare
supernatant Supernatant; Burkholderia bryophila 376MFSha3.1 spent media 0.5x -0.5 -2.5 compare
r2a control with 0.2% methanol R2A control with 0.2% methanol -0.5 -1.4 compare
nitrogen source nitrogen source nitrite 0.5mM -0.5 -1.8 compare
nitrogen source DL-2-Aminobutyric (N) +0.5 +3.0 compare
nitrogen source nitrogen source nitrate 5mM +0.5 +2.1 compare
nitrogen source Urea (N) +0.5 +1.8 compare
carbon source L-Arginine (C) +0.5 +3.0 compare
in planta Plant=Zea_mays-bx1; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.6 +1.8 compare
carbon source ferulate (C); with MOPS +0.6 +1.4 compare
pH pH 9 +0.6 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.6 +2.1 compare
carbon source Succinic Acid (C) +0.8 +4.1 compare
nitrogen source D-2-Aminobutyric (N) +0.8 +2.8 compare
carbon source a-Ketoglutaric (C) +1.2 +7.7 compare