Fitness data for PP_5373 in Pseudomonas putida KT2440

Rieske 2Fe-2S family protein
SEED: Benzoate 1,2-dioxygenase (EC 1.14.12.10)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
carbon source D-Glucose (C) -0.4 -2.0 compare
nitrogen source Urea (N); with MOPS -0.4 -1.9 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) -0.3 -1.9 compare
reactor 24hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.3 -2.1 compare
carbon source Tween 20 (C) -0.3 -1.8 compare
carbon source ferulate (C); with MOPS -0.3 -1.7 compare
carbon source 5-Aminovaleric 10 mM (C) -0.3 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs -0.3 -1.3 compare
nitrogen source nitrogen source nitrate 5mM -0.3 -1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.3 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.9 compare
phage P. putida Missley MOI 0.1 +0.3 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.3 +2.0 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +2.0 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.3 +1.7 compare
phage P. putida Sci small MOI 0.1 +0.4 +2.0 compare
phage P. putida PUT 7 MOI 1 +0.4 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +2.4 compare
nitrogen source D-2-Aminobutyric (N) +0.4 +2.1 compare
nitrogen source Propandiamine (N) +0.5 +2.9 compare