Fitness data for PP_5126 in Pseudomonas putida KT2440

conserved protein of unknown function containing an HDOD domain
SEED: Predicted signal transduction protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
pH pH 8 -0.6 -2.6 compare
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.4 -1.9 compare
pH Growth at pH6 and (C) D-Glucose -0.4 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.4 -1.7 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.4 -2.1 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.3 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.3 +1.7 compare
temperature shift Temperature shift 30_to_25 +0.3 +1.7 compare
phage P. putida Sci Big MOI 0.1 +0.3 +1.6 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.3 +1.8 compare
carbon source L-Proline (C) +0.3 +2.3 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.3 +2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant +0.4 +2.1 compare
stress Growth with Chloride 200 mM; with MOPS +0.4 +1.9 compare
pH Growth at pH6 and (C) D-Glucose +0.4 +1.9 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant +0.4 +2.4 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.5 +2.3 compare
stress Geraniol 1 vol% +0.5 +3.9 compare
temperature shift Temperature shift 30_to_25 +0.5 +3.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +3.3 compare