Fitness data for PP_5125 in Pseudomonas putida KT2440

Formamidopyrimidine-DNA glycosylase
SEED: Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23)
KEGG: formamidopyrimidine-DNA glycosylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
pH Growth at pH7 and (C) D-Glucose -0.9 -1.2 compare
carbon source 2-Methylbutanoic (C) -0.7 -2.2 compare
nitrogen source 2,6-diaminopimelic (N) -0.7 -1.4 compare
carbon source Valerolactone (C) -0.7 -2.0 compare
phage P. putida Missley MOI 0.1 -0.7 -1.9 compare
mixed carbon source mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM -0.6 -2.8 compare
nitrogen source nitrogen source nitrate 20mM -0.6 -1.8 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.6 -2.0 compare
nitrogen source Propiolactam (N) -0.6 -1.9 compare
temperature Growth at 30C; with MOPS +0.6 +2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.6 +2.7 compare
carbon source 1,3-Butandiol (C) +0.6 +1.9 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM +0.7 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.7 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.7 +2.2 compare
pH Growth at pH6 and (C) Trisodium citrate +0.7 +2.3 compare
supernatant Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X +0.8 +2.2 compare
carbon source 3-Hydroxydecanoic (C) +0.8 +2.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.9 +2.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +1.7 compare