Fitness data for PP_5032 in Pseudomonas putida KT2440

Histidine ammonia-lyase
SEED: Histidine ammonia-lyase (EC 4.3.1.3)
KEGG: histidine ammonia-lyase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.6)


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group condition fitness t score  
carbon source L-Histidine (C) -4.7 -11.2 compare
temperature Growth at 25C -0.9 -1.6 compare
nitrogen source L-Histidine (N) -0.8 -5.1 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus -0.7 -2.7 compare
carbon source Rhamnogalacturonan - from potato (C) -0.6 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -0.6 -1.7 compare
carbon source 1,4-Butanediol (C) +0.6 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.6 +1.5 compare
phage P. putida Sci small MOI 0.1 +0.6 +2.2 compare
nitrogen source Ammonium chloride and TNT (N) +0.6 +2.7 compare
carbon source D-Glucose (C) +0.6 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6 +2.2 compare
nitrogen source NAG (N); with MOPS +0.6 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.6 +2.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.6 +2.3 compare
carbon source D-Glucose (C); with MOPS +0.7 +2.4 compare
reactor 48hr timepoint of 1L M9/1% dextrose DISCONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat set to 10% DO. +0.7 +3.2 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.7 +2.0 compare
phage P. putida Sci small MOI 0.1 +0.8 +3.7 compare
pH Growth at pH6 and (C) D-Glucose +0.8 +2.7 compare