Fitness data for PP_4968 in Pseudomonas putida KT2440

DNA ligase B
SEED: DNA ligase (EC 6.5.1.2)
KEGG: DNA ligase (NAD+)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.4)


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group condition fitness t score  
carbon source Valeric (C) -1.1 -3.4 compare
nitrogen source 2,6-diaminopimelic (N) -0.6 -2.1 compare
pH Growth at pH6 and (C) Trisodium citrate -0.6 -1.8 compare
stress Butanol 0.6 vol% -0.5 -2.2 compare
carbon source Trisodium citrate (C) -0.5 -1.6 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -1.4 compare
carbon source carbon source 2-Deoxy-D-glucose 50 mM +0.4 +1.5 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI +0.4 +2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.4 +1.5 compare
r2a control with 0.2x vogels R2A control with 0.2X Vogels +0.5 +3.1 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml +0.5 +1.8 compare
carbon source ferulate (C); with MOPS +0.5 +1.7 compare
carbon source 3-methyl-1-butanol 0.25 vol% (C) +0.5 +1.8 compare
in planta Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.5 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.5 +2.1 compare
in planta Plant=Zea_mays-B73; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +1.5 compare
carbon source carbon source 3-O-methyl-glucose 10 mM +0.5 +1.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.6 +1.8 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs +0.6 +3.3 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.8 +2.8 compare