Fitness data for PP_4929 in Pseudomonas putida KT2440

Transcriptional regulator, LysR family
SEED: LysR family transcriptional regulator PA4989

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.7)


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group condition fitness t score  
phage P. putida Missley MOI 0.1 -1.5 -1.7 compare
phage P. putida Sci small MOI 0.1 -1.4 -2.2 compare
carbon source carbon source 3-O-methyl-glucose 10 mM -1.1 -3.4 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -2.3 compare
carbon source D-Glucose (C) -1.0 -2.4 compare
stress MOPS minimal media_Glucose20mM with Poly(3-hydroxybutyric) 0.1 mg/mL -1.0 -2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.0 -1.5 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.9 -2.6 compare
temperature shift Temperature shift 10_to_30; with MOPS -0.9 -2.8 compare
pH Growth at pH6 and (C) Trisodium citrate -0.9 -1.3 compare
carbon source L-Lysine 10 mM (C) -0.8 -3.6 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.8 -1.5 compare
carbon source Valeric (C) -0.8 -2.0 compare
no stress control Growth with no stress -0.8 -2.1 compare
reactor 48hr timepoint from 1L M9/1% dextrose BATCH fermentation in 2L Sartorius Biostat reactor kept at 10% DO. -0.8 -2.5 compare
nitrogen source 2,6-diaminopimelic (N) -0.8 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -0.8 -1.9 compare
stress MOPS minimal media_Glucose20mM with Carbenicillin 100 .g/mL -0.7 -1.5 compare
carbon source Tween 20 (C) +0.7 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.9 +1.5 compare