Fitness data for PP_4812 in Pseudomonas putida KT2440

putative 3-methyladenine DNA glycosylase
SEED: DNA-3-methyladenine glycosylase II (EC 3.2.2.21)
KEGG: DNA-3-methyladenine glycosylase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
phage P. putida South MOI 0.1 -0.5 -3.0 compare
phage P. putida PUT10 MOI 1 -0.5 -3.4 compare
phage P. put South MOI 10 -0.4 -2.4 compare
phage PUT8 MOI 0.1 -0.4 -2.6 compare
phage P. putida Missley MOI 0.1 -0.4 -2.4 compare
phage PUT 8 MOI 1 -0.4 -2.2 compare
carbon source ferulate (C); with MOPS -0.3 -1.6 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -0.3 -1.7 compare
phage P. putida South MOI 1 -0.3 -1.9 compare
phage PUT8 MOI 0.1 -0.3 -1.6 compare
pH Growth at pH7 and (C) Trisodium citrate -0.3 -1.2 compare
agar plate interaction control Parafilmed volatile agar plate with no fungus +0.3 +1.7 compare
carbon source L-tyrosine 5 mM (C) +0.3 +2.0 compare
carbon source L-tyrosine 5 mM (C) +0.3 +1.9 compare
temperature shift Temperature shift 30_to_25; with MOPS +0.3 +1.9 compare
pH Growth at pH6 and (C) Trisodium citrate +0.3 +1.7 compare
phage P. putida Sci small MOI 0.1 +0.3 +1.8 compare
carbon source DL-3-Hydroxyisobutyric (C) +0.3 +2.4 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs +0.4 +2.0 compare