Fitness data for PP_4690 in Pseudomonas putida KT2440

Rieske 2Fe-2S family protein
SEED: Rieske 2Fe-2S family protein

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 1.0)


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group condition fitness t score  
carbon source acetate (C) -2.2 -2.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs -1.8 -2.5 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs -1.6 -1.7 compare
stress R2A with Polymyxin B sulfate 0.002 mg/ml -1.6 -2.5 compare
temperature shift Temperature shift 10_to_25; with MOPS -1.4 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -1.4 -3.3 compare
pH pH 5 -1.4 -1.6 compare
carbon source L-Lysine (C) -1.3 -1.7 compare
carbon source carbon source D-Xylose 66.6 mM and Glycerol 108.6 mM -1.3 -1.7 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -1.2 -1.3 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days -1.2 -2.4 compare
pH pH 9 -1.1 -1.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs -1.0 -1.8 compare
pH Growth at pH7 and (C) Trisodium citrate -1.0 -1.8 compare
nitrogen source NAG (N); with MOPS +1.1 +1.9 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +1.1 +2.0 compare
temperature Growth at 25C +1.2 +2.4 compare
carbon source Lignin Monomers (C) +1.5 +6.7 compare
carbon source 3-methyl-1-butanol (C) +1.7 +7.3 compare
nitrogen source D-2-Aminobutyric (N) +1.8 +4.6 compare