Fitness data for PP_4458 in Pseudomonas putida KT2440

putative Opine ABC transporter, periplasmic binding protein
SEED: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.4 -2.8 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 -0.4 -1.9 compare
nitrogen source D-2-Aminobutyric (N) -0.4 -2.2 compare
carbon source D-Glucose (C) -0.3 -1.9 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.3 -2.1 compare
carbon source propionate (C) -0.3 -2.4 compare
reactor 24hr timepoint of 1L M9/1% dextrose CONTINUOUS FED BATCH fermentation in 2L Sartorius Biostat, feed rate 1g/hr dextrose, set to 30% DO. -0.3 -2.3 compare
nitrogen source NAG (N); with MOPS -0.3 -1.5 compare
micoeukaryotes Tetrahymena sp., Mixed culture-1 -0.3 -2.2 compare
carbon source L-Lysine (C) -0.3 -2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +2.0 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +2.1 compare
carbon source 3-methyl-1-butanol 0.1 vol% (C) +0.3 +2.1 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days +0.3 +2.3 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.4 +2.5 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.4 +1.7 compare
phage P. putida Sci small MOI 0.1 +0.4 +2.4 compare
phage P. putida Sci small MOI 0.1 +0.5 +2.8 compare
phage P. putida Missley MOI 0.1 +0.7 +4.6 compare
phage P. putida PUT 7 MOI 1 +0.7 +4.7 compare