Fitness data for PP_4431 in Pseudomonas putida KT2440

Ornithine cyclodeaminase 1
SEED: Ornithine cyclodeaminase (EC 4.3.1.12)
KEGG: ornithine cyclodeaminase

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.3)


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group condition fitness t score  
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI ago3mutant -0.5 -3.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=288_hrs -0.5 -2.4 compare
carbon source D-Glucose (C) -0.5 -2.2 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth_LB; Time=7_days -0.4 -1.9 compare
carbon source 4-Aminobutyric 10 mM (C) -0.4 -2.2 compare
carbon source acetate (C) -0.4 -1.4 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI -0.4 -2.2 compare
pH pH 5 -0.4 -2.1 compare
carbon source Delta-Decalactone (C) -0.4 -2.4 compare
pH Growth at pH6 and (C) D-Glucose -0.3 -1.8 compare
stress Growth with Chloride 500 mM -0.3 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=144_hrs -0.3 -2.1 compare
carbon source carbon source 4-vinylphenol 0.01 mM -0.3 -1.6 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -1.7 compare
in planta Plant=Zea_mays; PlantTreatment=34_degrees_celsius_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.1 compare
in planta Plant=Zea_mays; PlantTreatment=NaCl_and_Fusarium; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days +0.3 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=72_hrs +0.4 +2.2 compare
phage P. putida Sci small MOI 0.1 +0.4 +2.2 compare
phage P. putida Missley MOI 0.1 +0.7 +4.0 compare
phage P. putida PUT 7 MOI 1 +0.7 +4.7 compare