Fitness data for PP_4429 in Pseudomonas putida KT2440

Transcriptional regulator, GntR family
SEED: Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)

Top 20 experiments with the strongest phenotypes (|fitness| ≥ 0.2)


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group condition fitness t score  
carbon source carbon source 2-Deoxy-D-glucose 100 mM -0.4 -2.6 compare
pH Growth at pH6 and (C) Trisodium citrate -0.3 -2.1 compare
pH pH 7 -0.3 -2.1 compare
agar plate interaction Parafilmed volatile agar plate with Trichoderma atroviridae IMI tmk3mutant -0.3 -2.0 compare
carbon source acetate (C) -0.3 -1.7 compare
stress Growth with Chloride 500 mM; with MOPS -0.3 -2.0 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -1.8 compare
temperature shift Temperature shift 30_to_25; with MOPS -0.3 -1.8 compare
carbon source carbon source 4-vinylphenol 0.1 mM -0.3 -1.9 compare
carbon source carbon source Bisabolol 45 mM -0.3 -1.9 compare
carbon source 1,4-Butanediol (C) -0.2 -2.1 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=coldshock; SoilTreatmentTime=0_hrs +0.2 +1.9 compare
phage P. putida Sci small MOI 0.1 +0.2 +1.6 compare
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=20h_outgrowth_LB; Time=7_days +0.3 +1.9 compare
micoeukaryotes Tetrahymena sp., Mixed culture-2 +0.3 +1.6 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 +2.2 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=sterile; Collection=outgrowth_in_LB_2hrs_then_extra_outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=144_hrs +0.3 +1.9 compare
soil Soil=PNNL_Prosser_PlotA_B_20191220; Sterility=nonsterile; Collection=outgrowth_in_LB; SoilTreatment=none; SoilTreatmentTime=288_hrs +0.3 +2.3 compare
phage P. putida Missley MOI 0.1 +0.6 +4.0 compare
phage P. putida PUT 7 MOI 1 +0.7 +5.2 compare